Non-Coding RNA Search

Ss1.1-Pig4-TMW8041A22.3

Sequence:


               
               ATCCCTCAGGCCAGCCATCTTTGCCTCTTCTGCCTTGAGGGCAGATACCGGGGGAGGCTC
ACAGCGCGCCTTGTTGAAAGGGCTGGAGGGGCTGAGAGCCCTGGGAACGGGCAGAGGCAG
CAGAGGCCGTGGCCTGAGGTGACCTGAGTGGCTGGTGGCCGAAAAAATGGGGAGGGGTGG
ACTTGTCATGCCGGGACCCACACTCTTCCTGCTGTTGGTGCTGCCACCTCCCCTACTGAG
CGCAGGGAGCTTCCAGCACAGTGGTCCAGACTGGAAAGACCTCCACCGCCTCACTCGGGA
CTGGGGAAATCTCTACCGCCACCTCATCCAGAATGAGGGAACTTTCCAGCATCTCCGTGG
CCCAGCCATCTGGCTCCAGGAGAACAAGGAAAAAGACAAGGATTCCTGCCAGAGCACATA
TGACCTCTACTTCATCTTGGACATGTGAGTGGCCCTTCTGCCCTTCCCAGCGCCATTGAG
TGGTGCTATCTCTGCTGTCAGTATGGGCAAGACTTAAAGGGACACCAGCTTCTGTGAGGG
GAGAGGGAGGAGTAGTCTTGGTCAAACCCAAGGAACAGAACTCTGTGGCCTCCTTGTACT
GAGAAGGAATTCCCTGGACATTTGTTTCTTGGGACTTTTTCTTTGGGAAAGGAAAATGGG
CCACCATAGTTTTCTGGATGGCTCTCAACTTGGCTTGGACTTGTGATCTCCATGCCCCTT
AAACACCTGCAGGGGCAGGTGATTTCTAGGAGCTATCTTCTCAGCAGTTGTGAGAAGCTC
ACTTTGGGTTTGGAGTTGTGCTTGGTTTTTGCTTTGTTTTTACCAAATGACCTCTATTTT
TGCCCAGCCCCAGAGTGTCTTCTGTTGGGCACCCTCATGCTGTCACTGCATAGAATGGCC
TTTGCTTTGTTGTTTCTAAGTTTTGCTTCTTTTTTGATAACTTGGAGACACATGTTACAG
TTTGTGCATACTTTCAGAGCAGTTTTGTCTGTCTAATTTTGTCCCTGGGGAAACTGGGCT
GTGCATTAGGCACTTTCTGTGCATAAAAGAAAGAAAGGAAGGCATGGGTCCTCAGACTGG
AAAGATTGCCTTGTTTCCATTTTCAATTTCTCTGTAGCATTGTGAATAAACATTATATAT
TTAGCTCGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCCTCAGGCCAGCCATCTTTGCCTCTTCTGCCTTGAGGGCAGATACCGGGGGAGGCTC
ACAGCGCGCCTTGTTGAAAGGGCTGGAGGGGCTGAGAGCCCTGGGAACGGGCAGAGGCAG
CAGAGGCCGTGGCCTGAGGTGACCTGAGTGGCTGGTGGCCGAAAAAATGGGGAGGGGTGG
ACTTGTCATGCCGGGACCCACACTCTTCCTGCTGTTGGTGCTGCCACCTCCCCTACTGAG
CGCAGGGAGCTTCCAGCACAGTGGTCCAGACTGGAAAGACCTCCACCGCCTCACTCGGGA
CTGGGGAAATCTCTACCGCCACCTCATCCAGAATGAGGGAACTTTCCAGCATCTCCGTGG
CCCAGCCATCTGGCTCCAGGAGAACAAGGAAAAAGACAAGGATTCCTGCCAGAGCACATA
TGACCTCTACTTCATCTTGGACATGTGAGTGGCCCTTCTGCCCTTCCCAGCGCCATTGAG
TGGTGCTATCTCTGCTGTCAGTATGGGCAAGACTTAAAGGGACACCAGCTTCTGTGAGGG
GAGAGGGAGGAGTAGTCTTGGTCAAACCCAAGGAACAGAACTCTGTGGCCTCCTTGTACT
GAGAAGGAATTCCCTGGACATTTGTTTCTTGGGACTTTTTCTTTGGGAAAGGAAAATGGG
CCACCATAGTTTTCTGGATGGCTCTCAACTTGGCTTGGACTTGTGATCTCCATGCCCCTT
AAACACCTGCAGGGGCAGGTGATTTCTAGGAGCTATCTTCTCAGCAGTTGTGAGAAGCTC
ACTTTGGGTTTGGAGTTGTGCTTGGTTTTTGCTTTGTTTTTACCAAATGACCTCTATTTT
TGCCCAGCCCCAGAGTGTCTTCTGTTGGGCACCCTCATGCTGTCACTGCATAGAATGGCC
TTTGCTTTGTTGTTTCTAAGTTTTGCTTCTTTTTTGATAACTTGGAGACACATGTTACAG
TTTGTGCATACTTTCAGAGCAGTTTTGTCTGTCTAATTTTGTCCCTGGGGAAACTGGGCT
GTGCATTAGGCACTTTCTGTGCATAAAAGAAAGAAAGGAAGGCATGGGTCCTCAGACTGG
AAAGATTGCCTTGTTTCCATTTTCAATTTCTCTGTAGCATTGTGAATAAACATTATATAT
TTAGCTCGAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-96, + strand, RNAz p=0.851475

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-96, + strand, RNAz p=0.851475

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1144, gnl|bosTau2|chr28 (32281717-32280530)
               

               
               1-1144, gnl|Hg17|chr10 (47128278-47129459)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1144, gnl|bosTau2|chr28 (32281717-32280530)
               

               
               1-1144, gnl|Hg17|chr10 (47128278-47129459)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	1-1144, gnl\|bosTau2\|chr28 (32281717-32280530)
	1-1144, gnl\|Hg17\|chr10 (47128278-47129459)