Non-Coding RNA Search

Ss1.1-Pig4-TMW8041B01.3

Sequence:


               
               CCGCGGGACAAAGCCTGAGAGCCCGCGCCCAGAGCCATGTCCTCGTCCGCCGGCAGCGGC
CACCAGCCCAGCCAGAGCCGTGCCATCCCCACCCGCACCGTGCCCATCAGCGACGCCGCG
CAGCTACCTCATGACTATTGCACCACGCCCGGGGGGACCCTCTTCTCCACCACGCCGGGA
GGAACTCGAATCATTTATGATCGAAAGTTTCTGTTGGATCGTCGCAACTCTCCCATGGCT
CAGACCCCACCCTGCCATCTGCCCAACATCCCAGGAGTCACCAGCCCTGGCACCTTAATT
GAAGACTCCAAAGTAGAAGTAAACACAATTTGAACAACTTGAACAATCATGACAGGAAGC
ATGCAGTTGGGGATGATGCTCAGTTTGAGATGGACATCTGACTGTCCTACGAGGATCAGA
AGAAAAGCAGTAACACCGATAGCTGTGTGTACATGATTTGGCATGGGATCAACAATGCAG
AGATGGAAGAGGCAGTACCAGCAGTCCCCGTTGCAGTCTCCACCTCCTCCTGGTGCCAAA
GGATGCGAAGATAAGCCGCATCCAGCCATTTCTTATCCCTGTTTCCTGTTCCCCTTCTCA
CTTAGACAGTTAGATTGAAGGCCCTTGTCATATTTCTGTAGAACTAAGCAGCCCACAGAG
GAAAACGGTTAAACTCTGGTTCTCTCCCCTGCCCCCATTTTTTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCGGGACAAAGCCTGAGAGCCCGCGCCCAGAGCCATGTCCTCGTCCGCCGGCAGCGGC
CACCAGCCCAGCCAGAGCCGTGCCATCCCCACCCGCACCGTGCCCATCAGCGACGCCGCG
CAGCTACCTCATGACTATTGCACCACGCCCGGGGGGACCCTCTTCTCCACCACGCCGGGA
GGAACTCGAATCATTTATGATCGAAAGTTTCTGTTGGATCGTCGCAACTCTCCCATGGCT
CAGACCCCACCCTGCCATCTGCCCAACATCCCAGGAGTCACCAGCCCTGGCACCTTAATT
GAAGACTCCAAAGTAGAAGTAAACACAATTTGAACAACTTGAACAATCATGACAGGAAGC
ATGCAGTTGGGGATGATGCTCAGTTTGAGATGGACATCTGACTGTCCTACGAGGATCAGA
AGAAAAGCAGTAACACCGATAGCTGTGTGTACATGATTTGGCATGGGATCAACAATGCAG
AGATGGAAGAGGCAGTACCAGCAGTCCCCGTTGCAGTCTCCACCTCCTCCTGGTGCCAAA
GGATGCGAAGATAAGCCGCATCCAGCCATTTCTTATCCCTGTTTCCTGTTCCCCTTCTCA
CTTAGACAGTTAGATTGAAGGCCCTTGTCATATTTCTGTAGAACTAAGCAGCCCACAGAG
GAAAACGGTTAAACTCTGGTTCTCTCCCCTGCCCCCATTTTTTAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|30583473|gb|AAP35981.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30583473|gb|AAP35981.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               610-703, - strand, RNAz p=0.78474

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               610-703, - strand, RNAz p=0.78474

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-182, gnl|bosTau2|chr28 (19199701-19199520)
               

               
               1-182, gnl|Hg17|chr10 (71834129-71834309)
               

               
               1-182, gnl|Mm7|chr10 (60970193-60969988)
               


               
               369-703, gnl|bosTau2|chr28 (20610054-20609709)
               

               
               369-703, gnl|canFam2|chr4 (24567614-24567847)
               

               
               369-703, gnl|dasNov1|scaffold_247451 (48-278)
               

               
               369-703, gnl|echTel1|scaffold_284443 (75023-75225)
               

               
               369-703, gnl|Hg17|chr10 (71851477-71851848)
               

               
               369-703, gnl|hg17|chr17 (23047014-23047247)
               

               
               369-703, gnl|loxAfr1|scaffold_7873 (29562-29333)
               

               
               369-703, gnl|mm7|chr10 (60951417-60951225)
               

               
               369-703, gnl|Mm7|chr10 (60951416-60951108)
               

               
               369-703, gnl|monDom2|scaffold_41 (20271204-20270977)
               

               
               369-703, gnl|oryCun1|scaffold_165833 (5120-4891)
               

               
               369-703, gnl|panTro1|chr19 (26377178-26377411)
               

               
               369-703, gnl|rheMac2|chr4 (94131902-94131671)
               

               
               369-703, gnl|rn3|chr20 (29577738-29577545)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-182, gnl|bosTau2|chr28 (19199701-19199520)
               

               
               1-182, gnl|Hg17|chr10 (71834129-71834309)
               

               
               1-182, gnl|Mm7|chr10 (60970193-60969988)
               


               
               369-703, gnl|bosTau2|chr28 (20610054-20609709)
               

               
               369-703, gnl|canFam2|chr4 (24567614-24567847)
               

               
               369-703, gnl|dasNov1|scaffold_247451 (48-278)
               

               
               369-703, gnl|echTel1|scaffold_284443 (75023-75225)
               

               
               369-703, gnl|Hg17|chr10 (71851477-71851848)
               

               
               369-703, gnl|hg17|chr17 (23047014-23047247)
               

               
               369-703, gnl|loxAfr1|scaffold_7873 (29562-29333)
               

               
               369-703, gnl|mm7|chr10 (60951417-60951225)
               

               
               369-703, gnl|Mm7|chr10 (60951416-60951108)
               

               
               369-703, gnl|monDom2|scaffold_41 (20271204-20270977)
               

               
               369-703, gnl|oryCun1|scaffold_165833 (5120-4891)
               

               
               369-703, gnl|panTro1|chr19 (26377178-26377411)
               

               
               369-703, gnl|rheMac2|chr4 (94131902-94131671)
               

               
               369-703, gnl|rn3|chr20 (29577738-29577545)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.272628)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)

	1-182, gnl\|bosTau2\|chr28 (19199701-19199520)
	1-182, gnl\|Hg17\|chr10 (71834129-71834309)
	1-182, gnl\|Mm7\|chr10 (60970193-60969988)

	369-703, gnl\|bosTau2\|chr28 (20610054-20609709)
	369-703, gnl\|canFam2\|chr4 (24567614-24567847)
	369-703, gnl\|dasNov1\|scaffold_247451 (48-278)
	369-703, gnl\|echTel1\|scaffold_284443 (75023-75225)
	369-703, gnl\|Hg17\|chr10 (71851477-71851848)
	369-703, gnl\|hg17\|chr17 (23047014-23047247)
	369-703, gnl\|loxAfr1\|scaffold_7873 (29562-29333)
	369-703, gnl\|mm7\|chr10 (60951417-60951225)
	369-703, gnl\|Mm7\|chr10 (60951416-60951108)
	369-703, gnl\|monDom2\|scaffold_41 (20271204-20270977)
	369-703, gnl\|oryCun1\|scaffold_165833 (5120-4891)
	369-703, gnl\|panTro1\|chr19 (26377178-26377411)
	369-703, gnl\|rheMac2\|chr4 (94131902-94131671)
	369-703, gnl\|rn3\|chr20 (29577738-29577545)