Non-Coding RNA Search

Ss1.1-Pig4-TMW8041B03.3

Sequence:


               
               TCGCCTTGAGATGTCCTTTCTGTTGACAGAACTTTAGTTGTTTGCCGTTGCTATATGTTC
TTTTTTAGGAGCCATCAGATCTCTTCTCTCCTATGGGAGAATGTCCTGTTAGCATTTTCA
GGTCTTTTAATGCAATAAATGTGCAATCCCAAATAATGCCACTATAGGTGAATGTGGCGT
TGTTAAAGAAAATATTATAATAAACCTACACTTGGGCTTAGTGTACCTCTATCAAAGCCT
TTTGAATGACTAAAGTGTTCTAGAGAAACAAGTGTTTCTGTGGAAAGAGGTGGTTAATAT
TTCTTGGTAGCTTATCTGAAATCAAAGATGCTGCTTCTGCACATTGTTGTCCTTCATCTA
GTATCTGTCTTCACTGTCTTCTGGGAGCATAGCAAGTGAGTAGAACTCATTTCTTGGGGT
GGAATGGGTCAAGGATCCTCAAAAGGGACAATAGTACTGCCAGAGCAATTTCTTTTGCAG
AATAGTTGCTGTAATTTGACAAATGCTCTATTGAAAATTGACATTTTTATAATAGTTTAT
CAGGGCATCTGATTTCTTATCCCATAGTTTTTTTGTTTTATTTTTAAACAGTAAGTACTT
TGATGTCAGACATGTCCCCTTCCTTTCTTTCTTACTATTGCTCTTTTTTCCTTGGAGGTC
AAGGTTATTATTTATTTCTGGGTATTGCCTTTATACCAGAAGTCTTCTGTATCACCCCTT
GGATGGTTTTAACTACCGTATCTTTAGATAAGGTTTCTCTTTTTCACTCAGTCCTGGGAA
TGTTTCTGTTGCAGCGTTAGGTGGTAAATTCTAGCAATAAGAAGGAAAGATGTGACATCA
GAGCTCCTATCTAGTAAAAAACTTGTAGTTGAAGATTTGCGTATACGATGAGGCAACGGG
ATTTACTTCCTCTTTTGTCCCAGTATTAAGAAATTCAGGTCAGCTTGTCCTCTTCCTACA
GGGGGATTTTTTTTTTTTCTCCCCCTGCAGGTTCCTTCATTTTTTCCACTTCCTTTGTCC
TAAAGAATCAAAGTATCTCCTTTGGTTTTTTTCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCCTTGAGATGTCCTTTCTGTTGACAGAACTTTAGTTGTTTGCCGTTGCTATATGTTC
TTTTTTAGGAGCCATCAGATCTCTTCTCTCCTATGGGAGAATGTCCTGTTAGCATTTTCA
GGTCTTTTAATGCAATAAATGTGCAATCCCAAATAATGCCACTATAGGTGAATGTGGCGT
TGTTAAAGAAAATATTATAATAAACCTACACTTGGGCTTAGTGTACCTCTATCAAAGCCT
TTTGAATGACTAAAGTGTTCTAGAGAAACAAGTGTTTCTGTGGAAAGAGGTGGTTAATAT
TTCTTGGTAGCTTATCTGAAATCAAAGATGCTGCTTCTGCACATTGTTGTCCTTCATCTA
GTATCTGTCTTCACTGTCTTCTGGGAGCATAGCAAGTGAGTAGAACTCATTTCTTGGGGT
GGAATGGGTCAAGGATCCTCAAAAGGGACAATAGTACTGCCAGAGCAATTTCTTTTGCAG
AATAGTTGCTGTAATTTGACAAATGCTCTATTGAAAATTGACATTTTTATAATAGTTTAT
CAGGGCATCTGATTTCTTATCCCATAGTTTTTTTGTTTTATTTTTAAACAGTAAGTACTT
TGATGTCAGACATGTCCCCTTCCTTTCTTTCTTACTATTGCTCTTTTTTCCTTGGAGGTC
AAGGTTATTATTTATTTCTGGGTATTGCCTTTATACCAGAAGTCTTCTGTATCACCCCTT
GGATGGTTTTAACTACCGTATCTTTAGATAAGGTTTCTCTTTTTCACTCAGTCCTGGGAA
TGTTTCTGTTGCAGCGTTAGGTGGTAAATTCTAGCAATAAGAAGGAAAGATGTGACATCA
GAGCTCCTATCTAGTAAAAAACTTGTAGTTGAAGATTTGCGTATACGATGAGGCAACGGG
ATTTACTTCCTCTTTTGTCCCAGTATTAAGAAATTCAGGTCAGCTTGTCCTCTTCCTACA
GGGGGATTTTTTTTTTTTCTCCCCCTGCAGGTTCCTTCATTTTTTCCACTTCCTTTGTCC
TAAAGAATCAAAGTATCTCCTTTGGTTTTTTTCCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-235, + strand, RNAz p=0.996304

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-235, + strand, RNAz p=0.996304

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-540, gnl|bosTau2|chr16 (1857763-1857237)
               

               
               3-540, gnl|Hg17|chr1 (201255523-201256352)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-540, gnl|bosTau2|chr16 (1857763-1857237)
               

               
               3-540, gnl|Hg17|chr1 (201255523-201256352)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	3-540, gnl\|bosTau2\|chr16 (1857763-1857237)
	3-540, gnl\|Hg17\|chr1 (201255523-201256352)