Non-Coding RNA Search

Ss1.1-Pig4-TMW8041B17.5

Sequence:


               
               AAAATCATTGTCACTAAAACATGGAAGCCTTCAAAAGTAATCTCAAGGCTCCTTAAAACA
AGTCTAATTTCTCTTCTTTTTTTAAAAAAACAATTTAGGTTCATTATTGGATCAAAGACT
GATGCTGAGAGGTAAAAATATTTGCATCTTTATTTTTGATCTGGATGGATATGATAAACT
TCACTCTTAATAGAATAGAGAGTACTCCATTCAGAGTCAAGGCTTCAATTTTAATTATGC
CTTAGGTAATGCTAGGATTTTTTAATGGAATTAGGAAAATAACAATAATGTGTAAAATAT
AGCTTTATTTTAAACAAAATTTAGATATATCTACGGTAGCTAAGAAAAAGAATTTCTAGG
TAATATTTTAATCATTACGTAAGTGAAAGTCAGTGGTGATTCTTTTGGCTGCCTATTGGT
GCAGTAATACCTGTAATTGCTGTATTAGAGACAAGATACTGAAAATACGTCTTTAGGTTT
TTTTTTTAACTAGCAAAATGTTTTCAGCATTAGCTTGTCACTGAAAAATTAGAAGAATGT
CCTTTTAAGAAAGAAAATGGTCTGATTTTGATTTTTGCGTTAATTTTAATAGAACTTTTT
TACTATTTATTTCCTGTGTAATAAATTTATGTTTAAAACTGAGTTAGCTAATCTTTATCT
CTTTTGTCCCTAATGTTTCAGAGTAGTCAATCAGTACCAGGAATTGGTCCAGAATGAAGC
CAAATGTCCAGTGAAGATGTCACATAGCTCCAGTGGCTCAGCCAGCTTGAGTCAGCTTTC
TCCAGGGAAAGAAACAGAACAGCCTGAGACCGTGTCAGTTCAGTCTTCAGTACTAGGAAA
GGGACTAAAACATCGACCTCCGCCCATCAAACTTCCCTCAAGCTCAGGGAATAGTTCTTC
AGGTAACTATTTTACACCACAACAGGCCAGCAGCTTTCTTAAATCTCCAACTCCTCCTCC
TGCTTCTAAGCCACCCAGTCTTTCTCGGAAGTCATCTGTGGATCTCAATCAAGTTAGCAT
GCTTTCTCCAGCTGCCCTCTCACCTGCCAGTTCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATCATTGTCACTAAAACATGGAAGCCTTCAAAAGTAATCTCAAGGCTCCTTAAAACA
AGTCTAATTTCTCTTCTTTTTTTAAAAAAACAATTTAGGTTCATTATTGGATCAAAGACT
GATGCTGAGAGGTAAAAATATTTGCATCTTTATTTTTGATCTGGATGGATATGATAAACT
TCACTCTTAATAGAATAGAGAGTACTCCATTCAGAGTCAAGGCTTCAATTTTAATTATGC
CTTAGGTAATGCTAGGATTTTTTAATGGAATTAGGAAAATAACAATAATGTGTAAAATAT
AGCTTTATTTTAAACAAAATTTAGATATATCTACGGTAGCTAAGAAAAAGAATTTCTAGG
TAATATTTTAATCATTACGTAAGTGAAAGTCAGTGGTGATTCTTTTGGCTGCCTATTGGT
GCAGTAATACCTGTAATTGCTGTATTAGAGACAAGATACTGAAAATACGTCTTTAGGTTT
TTTTTTTAACTAGCAAAATGTTTTCAGCATTAGCTTGTCACTGAAAAATTAGAAGAATGT
CCTTTTAAGAAAGAAAATGGTCTGATTTTGATTTTTGCGTTAATTTTAATAGAACTTTTT
TACTATTTATTTCCTGTGTAATAAATTTATGTTTAAAACTGAGTTAGCTAATCTTTATCT
CTTTTGTCCCTAATGTTTCAGAGTAGTCAATCAGTACCAGGAATTGGTCCAGAATGAAGC
CAAATGTCCAGTGAAGATGTCACATAGCTCCAGTGGCTCAGCCAGCTTGAGTCAGCTTTC
TCCAGGGAAAGAAACAGAACAGCCTGAGACCGTGTCAGTTCAGTCTTCAGTACTAGGAAA
GGGACTAAAACATCGACCTCCGCCCATCAAACTTCCCTCAAGCTCAGGGAATAGTTCTTC
AGGTAACTATTTTACACCACAACAGGCCAGCAGCTTTCTTAAATCTCCAACTCCTCCTCC
TGCTTCTAAGCCACCCAGTCTTTCTCGGAAGTCATCTGTGGATCTCAATCAAGTTAGCAT
GCTTTCTCCAGCTGCCCTCTCACCTGCCAGTTCATC

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               25-799, gnl|bosTau2|chr12 (14823711-14822935)
               

               
               25-799, gnl|Hg17|chr13 (36498463-36497457)
               

               
               25-799, gnl|Mm7|chr3 (54842869-54844005)
               


               
               901-1056, gnl|bosTau2|chr12 (14822065-14821910)
               

               
               901-1056, gnl|Hg17|chr13 (36496332-36496177)
               

               
               901-1056, gnl|Mm7|chr3 (54844741-54844893)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-799, gnl|bosTau2|chr12 (14823711-14822935)
               

               
               25-799, gnl|Hg17|chr13 (36498463-36497457)
               

               
               25-799, gnl|Mm7|chr3 (54842869-54844005)
               


               
               901-1056, gnl|bosTau2|chr12 (14822065-14821910)
               

               
               901-1056, gnl|Hg17|chr13 (36496332-36496177)
               

               
               901-1056, gnl|Mm7|chr3 (54844741-54844893)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	25-799, gnl\|bosTau2\|chr12 (14823711-14822935)
	25-799, gnl\|Hg17\|chr13 (36498463-36497457)
	25-799, gnl\|Mm7\|chr3 (54842869-54844005)

	901-1056, gnl\|bosTau2\|chr12 (14822065-14821910)
	901-1056, gnl\|Hg17\|chr13 (36496332-36496177)
	901-1056, gnl\|Mm7\|chr3 (54844741-54844893)