Non-Coding RNA Search

Ss1.1-Pig4-TMW8041B19.5

Sequence:


               
               GTTTTCCGGGTTTGGAAGATTTTCATGCCACGACTTACGTTTTGGACAGAACTGAACTTG
GATGTGGGCTGAGTGAGCACCACGTGTTTTGGGGAGAGCGTTCATAGGTAACCTCTTTGA
GGTTTCTTGGCCTCTCTCCTTTTTAGTTGCGTACAGCCTGATTGTACGGTTTTGGTATTT
TGCAGACAGGTTTCTAGAGCGAAAGTTTGGTCCTCGTTTTGTGACCTTTTTGGACAGCTT
TGATTTTTAAAGTGGAACCAAATTTCATTTGGCAAATGCAGCAACCAAGCACATCTGTGT
AACCCATTTGGCCGCTGGTGCCACAGGTGGGGCCCAGGAGCCAGGCCTGGGCAGCGTGGG
GGCGCGTGGGGGCGGGCGGGCCTGGGGCAGGGGAAGTGGGGAGCCCCGCGGATCATGTTG
TACCAGCCGAGCTGGCGTCGAGGGAGGGGCTGGCGGGTGGGGCTCCTCCAAGGGTAGGAA
GGGCCTGCAGCGGGAGCTGGGGGCTGTCACTTGGAGCCTGGCTTCCAGAGCAGTCAGGGT
TGAGGGTGAATGCCTAGGACCAGCGCCCCCGTGGCCTCCCTGCCCCCGCTGCCCACCCCT
GGCCCAAGCCAGTCGCTGTTGGCCTCTGGCAGGACACTGTTCAGTGTCCCATCTACTTGG
AAGCGAGCCAGTCTTTTTTTGCAAGGTCGGTTGACCGAGAGCTTCTTTTCTCAGTTGTAA
ATAGTTGTGTGTTTTTGTTTGACTGGTGGGTGGCGGGAGGCGGGGAGTATAAATTCGCTG
CATGAGTAACGGTCCGACTTAGTAGAAGCATGTGCCCTCAGGTGACAGGGCATCGCGGGT
GAGAACACCTTGGTGACTAAATCCCTTCAGTAGCTGTAAAGGTTTTAGTTGTGCATTGAT
TAAGTTACCGTAAAAGCTTAGGTTTATTTTTGCAGCACTCAGTGGCTAAGCGTTAGAGCA
TAGCAGTGGGCTGCCCGGTTGGAGTCGTGTAAACTTGTAATTACAAATAAACATGCAAAT
CTTGAAAAAAAAAAAAAAAAAAAATGCCCGCATCGCCTCCCGCCTGACACGCCCTCTCAA
GGGGGGTGCTCCTCAGGCCTTGAGCTGGTGGGACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTCCGGGTTTGGAAGATTTTCATGCCACGACTTACGTTTTGGACAGAACTGAACTTG
GATGTGGGCTGAGTGAGCACCACGTGTTTTGGGGAGAGCGTTCATAGGTAACCTCTTTGA
GGTTTCTTGGCCTCTCTCCTTTTTAGTTGCGTACAGCCTGATTGTACGGTTTTGGTATTT
TGCAGACAGGTTTCTAGAGCGAAAGTTTGGTCCTCGTTTTGTGACCTTTTTGGACAGCTT
TGATTTTTAAAGTGGAACCAAATTTCATTTGGCAAATGCAGCAACCAAGCACATCTGTGT
AACCCATTTGGCCGCTGGTGCCACAGGTGGGGCCCAGGAGCCAGGCCTGGGCAGCGTGGG
GGCGCGTGGGGGCGGGCGGGCCTGGGGCAGGGGAAGTGGGGAGCCCCGCGGATCATGTTG
TACCAGCCGAGCTGGCGTCGAGGGAGGGGCTGGCGGGTGGGGCTCCTCCAAGGGTAGGAA
GGGCCTGCAGCGGGAGCTGGGGGCTGTCACTTGGAGCCTGGCTTCCAGAGCAGTCAGGGT
TGAGGGTGAATGCCTAGGACCAGCGCCCCCGTGGCCTCCCTGCCCCCGCTGCCCACCCCT
GGCCCAAGCCAGTCGCTGTTGGCCTCTGGCAGGACACTGTTCAGTGTCCCATCTACTTGG
AAGCGAGCCAGTCTTTTTTTGCAAGGTCGGTTGACCGAGAGCTTCTTTTCTCAGTTGTAA
ATAGTTGTGTGTTTTTGTTTGACTGGTGGGTGGCGGGAGGCGGGGAGTATAAATTCGCTG
CATGAGTAACGGTCCGACTTAGTAGAAGCATGTGCCCTCAGGTGACAGGGCATCGCGGGT
GAGAACACCTTGGTGACTAAATCCCTTCAGTAGCTGTAAAGGTTTTAGTTGTGCATTGAT
TAAGTTACCGTAAAAGCTTAGGTTTATTTTTGCAGCACTCAGTGGCTAAGCGTTAGAGCA
TAGCAGTGGGCTGCCCGGTTGGAGTCGTGTAAACTTGTAATTACAAATAAACATGCAAAT
CTTGAAAAAAAAAAAAAAAAAAAATGCCCGCATCGCCTCCCGCCTGACACGCCCTCTCAA
GGGGGGTGCTCCTCAGGCCTTGAGCTGGTGGGACTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-195, + strand, RNAz p=0.745481

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-195, + strand, RNAz p=0.745481

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_144703, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_144703, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-321, gnl|bosTau2|chr13 (36190077-36189764)
               

               
               1-321, gnl|Hg17|chr20 (60142700-60143033)
               

               
               1-321, gnl|Mm7|chr2 (180535289-180535617)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-321, gnl|bosTau2|chr13 (36190077-36189764)
               

               
               1-321, gnl|Hg17|chr20 (60142700-60143033)
               

               
               1-321, gnl|Mm7|chr2 (180535289-180535617)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cga (0.279096)
               

               
               che (0.272628)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	1-321, gnl\|bosTau2\|chr13 (36190077-36189764)
	1-321, gnl\|Hg17\|chr20 (60142700-60143033)
	1-321, gnl\|Mm7\|chr2 (180535289-180535617)

	cga (0.279096)
	che (0.272628)
	cbe (0.239234)
	ece (0.229305)
	fty (0.17584)
	eye (0.170503)
	fhi (0.169578)
	cki (0.165235)
	thg (0.126791)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	eje (0.0988338)