Ss1.1-Pig4-TMW8041B23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCTCTCTCTTCTCCTGGGGCTGGGGTCCAGAAACTGGGAACTTGTACGAGCTGGCTCA GGATGGCTGCAGTACCAGCCTAGGGCAGCAGGTACCACCTGAGAAATGCCCAAGTTTGAG GGGGTAAACAGGAAAAAGGATCTTTCTAGTAAAGCTAGTGGTCCAGGACAAAGCTGAGAA CTACAAAGGGCCAGTCTAATGCCCCTTTCTGGGGCCAGAAGAAGATATATCTCCCCACCT CTACACCATCCAGACGGTCAAAGCCCCTCTGGAGGGCCATGGTGCTCAGCCCCTTGACCT TCCCCCACTTCTTCTAGATGGAAGAGTCTGACTCACCCACTTCCCTTCTTTCTGATCCGC ACAGAGTTGAGGGAGAAGGGGAGGAGTCTGTGCTGGGATGACCCGCATCCAGGGCGTGAA GCCCCTGTCACAGGCCCCTAGTCGGGAAGATTGGAGGAGGGCGGAGTCTCCATTTCCCAC ATCTATCCTTGTTACTTGAACAATCTCAATCTCTGAAGTGTTGGGTGGGAAGGTGAAGGG GTGTCTAGGCAGGAAGGCAAGATTGGGGACCTCTTTGGCCTGGGAATTTGGGGGGCCTAA GGATTCAGGTTGGTCCCATCTCTCTTGAAGGCCAGCCCAGAGCTCAGGCCCCACACCACC ACCCTCAGACCCTATCGCTAGGGCTAGGGTGAACCATGCCAAAGGAAGGGGCCAGCCTGT GCATGGGTGTGTGCGTGCATGCATGTTGTGTGTGTGCACACATGTGCACATGCGTGTGTG AGTTCTGTGTGTCATCTCCCAGCCTATCTGTGTCTTTCTCTGCCAGCTGTCTCTGACCTG CTGTGTGTCAAAGTCTTATAGGGAGAGGGCCTCAGGGAGCTGCTGGGGGGTGCTGAGCCT GGCTTCGAGAGCTGGAGCACTCTCCACATACACTCAGTTCTTTCCTTCTTGCCCCTCCTG CACTGGGAGCAAGAGGAGGGGGCTCTAATGACACTCTAGGGTCATAAGACCCAAGGCACA TTCAATGCAAGAGGAGCCAGGATGGGACAACTCCATCCTGTTGCTCATGTGAAAAATAAA AAATAAAAACCAAGGGCCATTGGCTGCCCTGCTTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCTCTCTCTTCTCCTGGGGCTGGGGTCCAGAAACTGGGAACTTGTACGAGCTGGCTCA GGATGGCTGCAGTACCAGCCTAGGGCAGCAGGTACCACCTGAGAAATGCCCAAGTTTGAG GGGGTAAACAGGAAAAAGGATCTTTCTAGTAAAGCTAGTGGTCCAGGACAAAGCTGAGAA CTACAAAGGGCCAGTCTAATGCCCCTTTCTGGGGCCAGAAGAAGATATATCTCCCCACCT CTACACCATCCAGACGGTCAAAGCCCCTCTGGAGGGCCATGGTGCTCAGCCCCTTGACCT TCCCCCACTTCTTCTAGATGGAAGAGTCTGACTCACCCACTTCCCTTCTTTCTGATCCGC ACAGAGTTGAGGGAGAAGGGGAGGAGTCTGTGCTGGGATGACCCGCATCCAGGGCGTGAA GCCCCTGTCACAGGCCCCTAGTCGGGAAGATTGGAGGAGGGCGGAGTCTCCATTTCCCAC ATCTATCCTTGTTACTTGAACAATCTCAATCTCTGAAGTGTTGGGTGGGAAGGTGAAGGG GTGTCTAGGCAGGAAGGCAAGATTGGGGACCTCTTTGGCCTGGGAATTTGGGGGGCCTAA GGATTCAGGTTGGTCCCATCTCTCTTGAAGGCCAGCCCAGAGCTCAGGCCCCACACCACC ACCCTCAGACCCTATCGCTAGGGCTAGGGTGAACCATGCCAAAGGAAGGGGCCAGCCTGT GCATGGGTGTGTGCGTGCATGCATGTTGTGTGTGTGCACACATGTGCACATGCGTGTGTG AGTTCTGTGTGTCATCTCCCAGCCTATCTGTGTCTTTCTCTGCCAGCTGTCTCTGACCTG CTGTGTGTCAAAGTCTTATAGGGAGAGGGCCTCAGGGAGCTGCTGGGGGGTGCTGAGCCT GGCTTCGAGAGCTGGAGCACTCTCCACATACACTCAGTTCTTTCCTTCTTGCCCCTCCTG CACTGGGAGCAAGAGGAGGGGGCTCTAATGACACTCTAGGGTCATAAGACCCAAGGCACA TTCAATGCAAGAGGAGCCAGGATGGGACAACTCCATCCTGTTGCTCATGTGAAAAATAAA AAATAAAAACCAAGGGCCATTGGCTGCCCTGCTTGT |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 596-755, - strand, RNAz p=0.966734 | |
| 884-1116, - strand, RNAz p=0.996391 | |
| 929-1116, - strand, RNAz p=0.999803 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 596-755, - strand, RNAz p=0.966734 | |
| 884-1116, - strand, RNAz p=0.996391 | |
| 929-1116, - strand, RNAz p=0.999803 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 884-1071, DB806836 full-length enriched swine cDNA library, adult lung Sus (dbj|DB806836.1|), blast E-value=0, identity=100% | |
| 884-1071, DB807468 full-length enriched swine cDNA library, adult lung Sus (dbj|DB807468.1|), blast E-value=0, identity=100% | |
| 884-1071, DB810046 full-length enriched swine cDNA library, adult liver Sus (dbj|DB810046.1|), blast E-value=0, identity=100% | |
| 884-1071, DB818020 full-length enriched swine cDNA library, adult thymus Sus (dbj|DB818020.1|), blast E-value=0, identity=97.87% | |
| 933-1067, 1241844 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN287577.1|), blast E-value=5.60519e-45, identity=92.59% | |
| 933-1067, 1243380 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN288769.1|), blast E-value=5.60519e-45, identity=92.59% | |
| 929-1071, DB806836 full-length enriched swine cDNA library, adult lung Sus (dbj|DB806836.1|), blast E-value=0, identity=100% | |
| 929-1071, DB807468 full-length enriched swine cDNA library, adult lung Sus (dbj|DB807468.1|), blast E-value=0, identity=100% | |
| 929-1071, DB810046 full-length enriched swine cDNA library, adult liver Sus (dbj|DB810046.1|), blast E-value=0, identity=100% | |
| 929-1071, DB818020 full-length enriched swine cDNA library, adult thymus Sus (dbj|DB818020.1|), blast E-value=0, identity=97.9% | |
| 933-1067, 1241844 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN287577.1|), blast E-value=5.60519e-45, identity=92.59% | |
| 933-1067, 1243380 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN288769.1|), blast E-value=5.60519e-45, identity=92.59% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 884-1071, DB806836 full-length enriched swine cDNA library, adult lung Sus (dbj|DB806836.1|), blast E-value=0, identity=100% | |
| 884-1071, DB807468 full-length enriched swine cDNA library, adult lung Sus (dbj|DB807468.1|), blast E-value=0, identity=100% | |
| 884-1071, DB810046 full-length enriched swine cDNA library, adult liver Sus (dbj|DB810046.1|), blast E-value=0, identity=100% | |
| 884-1071, DB818020 full-length enriched swine cDNA library, adult thymus Sus (dbj|DB818020.1|), blast E-value=0, identity=97.87% | |
| 933-1067, 1241844 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN287577.1|), blast E-value=5.60519e-45, identity=92.59% | |
| 933-1067, 1243380 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN288769.1|), blast E-value=5.60519e-45, identity=92.59% | |
| 929-1071, DB806836 full-length enriched swine cDNA library, adult lung Sus (dbj|DB806836.1|), blast E-value=0, identity=100% | |
| 929-1071, DB807468 full-length enriched swine cDNA library, adult lung Sus (dbj|DB807468.1|), blast E-value=0, identity=100% | |
| 929-1071, DB810046 full-length enriched swine cDNA library, adult liver Sus (dbj|DB810046.1|), blast E-value=0, identity=100% | |
| 929-1071, DB818020 full-length enriched swine cDNA library, adult thymus Sus (dbj|DB818020.1|), blast E-value=0, identity=97.9% | |
| 933-1067, 1241844 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN287577.1|), blast E-value=5.60519e-45, identity=92.59% | |
| 933-1067, 1243380 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN288769.1|), blast E-value=5.60519e-45, identity=92.59% |
| Aligned organism(s): 15 entry(ies) | More info |
| Aligned organism(s): 15 entry(ies) | Help | Less info |
| 3-755, gnl|bosTau2|chr29 (18174253-18173525) | |
| 3-755, gnl|Hg17|chr11 (18680151-18680922) | |
| 3-755, gnl|Mm7|chr7 (43230053-43230689) | |
| 771-1116, gnl|bosTau2|chr29 (18173555-18173191) | |
| 771-1116, gnl|canFam2|chr21 (44264819-44265219) | |
| 771-1116, gnl|echTel1|scaffold_232650 (781-442) | |
| 771-1116, gnl|hg17|chr11 (18680753-18681141) | |
| 771-1116, gnl|Hg17|chr11 (18680905-18681251) | |
| 771-1116, gnl|loxAfr1|scaffold_60843 (5035-5372) | |
| 771-1116, gnl|mm7|chr7 (43230548-43230857) | |
| 771-1116, gnl|monDom2|scaffold_10 (52723050-52722664) | |
| 771-1116, gnl|oryCun1|scaffold_206322 (52370-52758) | |
| 771-1116, gnl|panTro1|chr9 (18914258-18914646) | |
| 771-1116, gnl|rheMac2|chr14 (53155049-53154631) | |
| 771-1116, gnl|rn3|chr1 (97686579-97686875) |
| Aligned organism(s): 15 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-755, gnl|bosTau2|chr29 (18174253-18173525) | |
| 3-755, gnl|Hg17|chr11 (18680151-18680922) | |
| 3-755, gnl|Mm7|chr7 (43230053-43230689) | |
| 771-1116, gnl|bosTau2|chr29 (18173555-18173191) | |
| 771-1116, gnl|canFam2|chr21 (44264819-44265219) | |
| 771-1116, gnl|echTel1|scaffold_232650 (781-442) | |
| 771-1116, gnl|hg17|chr11 (18680753-18681141) | |
| 771-1116, gnl|Hg17|chr11 (18680905-18681251) | |
| 771-1116, gnl|loxAfr1|scaffold_60843 (5035-5372) | |
| 771-1116, gnl|mm7|chr7 (43230548-43230857) | |
| 771-1116, gnl|monDom2|scaffold_10 (52723050-52722664) | |
| 771-1116, gnl|oryCun1|scaffold_206322 (52370-52758) | |
| 771-1116, gnl|panTro1|chr9 (18914258-18914646) | |
| 771-1116, gnl|rheMac2|chr14 (53155049-53154631) | |
| 771-1116, gnl|rn3|chr1 (97686579-97686875) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cga (0.279096) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| che (0.136314) | |
| nmm (0.132802) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| che (0.136314) | |
| nmm (0.132802) |