Non-Coding RNA Search

Ss1.1-Pig4-TMW8041C03.3

Sequence:


               
               GCACACCAATTTTTAACCCACAAGATTCCATCTGTGGCATTTGTACCAAATATAAGTTGG
ATGCATTTATTTTAGACACAAAGCTTTATTTTTCCACATCTTGCTAAAGAAAAATGCAAG
TAATTACAACTTTGAGGCCAATCATTTTAGGCATATGTTTTAAGCATAGAAAGTCTCAAA
CTCTCAATGGTTCCTTCAAATGATGAGTTAGTGTGCGACCTGATTAGTAACTTCTCTCTT
TTTATTTTTTCCATATAGAGCACTATGTAAATTTAGCATATCAATAATACAGGATATATC
AAACAGTATGTAAAACTCTGTTTTTTAGTACAATGGTGCTATTTTGTAGTTTGTTACATG
AAAGAGTCTGGCCAAAATGGTAAAAGGTGAAAGCAAAACAAAAGAGAAAGCCTGGAGCCA
AAGGTGACGCAGAGGGGAAGGGTACTAAAAATCCAATTGTCTAGGAAAGAAAAGTTCCCC
CAATAATGCCTTCCAAGAGAAATATGACACAAAGTCCACTGATGCAAATTTGGCAAGTCC
AGAGAGGAGTAGAAAAAGCAGAAAGCTAGGAATTTAACAGTCCTGGTTTCTTATTCTCAC
TGAAAAAACAGGCATCTGCTGACTCTGCCATGGACTCACCACTGTATGACCTTAGGCAAG
TCACTTCACCTCTCTGTGCCTCAGTTTCCTCATCTGCAAAGTGGGGGAAATATGTCATCT
GCCTACCTCACAGGGGTGGTATGAGGATTAAAAAGATAAAGCTCCAAAGTTTTATCCTAA
GTTGCTAAGAGGGCAACAAGATCAGAACCCTTAAGTTGCTAGGATGAAAGGAATTCTATT
AAAAAAACCATTCACGGTGTAGCTAGAAAATTGATTATCTGAATGCTCCTGAAATGCCAG
TTCTTGTCAGTGAACCTATTCAAGTAGCTATCCAACTAACTAGTTGTTAAAAGCTAACAT
ATCAAGCTCTTTTAAAACATTGTTCAAAATAACTTAGAAACATTTGATTTTTGAATTCTG
CATTAGGATTTACAAATACAAAGTGAAAAGAGGGAAGGGAAAAGAAAAAAGAAAAATAAA
GATTTCTATCAGTAAAAGGATGATTACTCCACTTCTTAGCACTTACTGACTCCTCCAGGT
AGTTACTAATAATCTAATAATATTTCTTTTAATATTATAAATGACACTCTATTCATTTTG
AAAAACACAGTTATTCCTTCTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACACCAATTTTTAACCCACAAGATTCCATCTGTGGCATTTGTACCAAATATAAGTTGG
ATGCATTTATTTTAGACACAAAGCTTTATTTTTCCACATCTTGCTAAAGAAAAATGCAAG
TAATTACAACTTTGAGGCCAATCATTTTAGGCATATGTTTTAAGCATAGAAAGTCTCAAA
CTCTCAATGGTTCCTTCAAATGATGAGTTAGTGTGCGACCTGATTAGTAACTTCTCTCTT
TTTATTTTTTCCATATAGAGCACTATGTAAATTTAGCATATCAATAATACAGGATATATC
AAACAGTATGTAAAACTCTGTTTTTTAGTACAATGGTGCTATTTTGTAGTTTGTTACATG
AAAGAGTCTGGCCAAAATGGTAAAAGGTGAAAGCAAAACAAAAGAGAAAGCCTGGAGCCA
AAGGTGACGCAGAGGGGAAGGGTACTAAAAATCCAATTGTCTAGGAAAGAAAAGTTCCCC
CAATAATGCCTTCCAAGAGAAATATGACACAAAGTCCACTGATGCAAATTTGGCAAGTCC
AGAGAGGAGTAGAAAAAGCAGAAAGCTAGGAATTTAACAGTCCTGGTTTCTTATTCTCAC
TGAAAAAACAGGCATCTGCTGACTCTGCCATGGACTCACCACTGTATGACCTTAGGCAAG
TCACTTCACCTCTCTGTGCCTCAGTTTCCTCATCTGCAAAGTGGGGGAAATATGTCATCT
GCCTACCTCACAGGGGTGGTATGAGGATTAAAAAGATAAAGCTCCAAAGTTTTATCCTAA
GTTGCTAAGAGGGCAACAAGATCAGAACCCTTAAGTTGCTAGGATGAAAGGAATTCTATT
AAAAAAACCATTCACGGTGTAGCTAGAAAATTGATTATCTGAATGCTCCTGAAATGCCAG
TTCTTGTCAGTGAACCTATTCAAGTAGCTATCCAACTAACTAGTTGTTAAAAGCTAACAT
ATCAAGCTCTTTTAAAACATTGTTCAAAATAACTTAGAAACATTTGATTTTTGAATTCTG
CATTAGGATTTACAAATACAAAGTGAAAAGAGGGAAGGGAAAAGAAAAAAGAAAAATAAA
GATTTCTATCAGTAAAAGGATGATTACTCCACTTCTTAGCACTTACTGACTCCTCCAGGT
AGTTACTAATAATCTAATAATATTTCTTTTAATATTATAAATGACACTCTATTCATTTTG
AAAAACACAGTTATTCCTTCTCTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1161, gnl|bosTau2|chr5 (37961872-37960712)
               

               
               1-1161, gnl|Hg17|chr12 (101298193-101297000)
               

               
               1-1161, gnl|Mm7|chr10 (87489522-87490716)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1161, gnl|bosTau2|chr5 (37961872-37960712)
               

               
               1-1161, gnl|Hg17|chr12 (101298193-101297000)
               

               
               1-1161, gnl|Mm7|chr10 (87489522-87490716)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-1161, gnl\|bosTau2\|chr5 (37961872-37960712)
	1-1161, gnl\|Hg17\|chr12 (101298193-101297000)
	1-1161, gnl\|Mm7\|chr10 (87489522-87490716)