Ss1.1-Pig4-TMW8041C11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAGCCGCTGCCGCCGCCCCCAGCTCCCCCGCAGCGGGGAGGGCACCAGGCCAGAAGGGG AGGGAGGCACAGCCTCCGCTGCAGCAGCCGCACCCGCGATGCAGAGCATCAAGTGCGTGG TGGTGGGCGATGGCGCCGTGGGCAAGACGTGCCTGCTCATCTGCTACACGACCAACGCCT TCCCCAAGGAGTACATCCCCACAGTGTTCGACAATTACAGCGCCCAGAGCGCAGTCGACG GGCGCACCGTGAACCTGAACCTGTGGGACACAGCGGGCCAGGAGGAGTACGACCGCCTCC GCACACTCTCCTACCCTCAGACCAACGTCTTCGTCATCTGTTTCTCCATCGCCAGTCCGC CCTCCTATGAGAATGTGCGGCACAAGTGGCATCCAGAGGTGTGCCACCACTGCCCCGACG TGCCCATCCTCCTGGTGGGCACCAAGAAGGACCTGAGATCCCAGCCTGACACCCTACGGC GCCTCAAGGAGCAGGGCCAGGCGCCCATCACGCCGCAGCAGGGCCAGGCGCTGGCCAAGC AGATCCACGCTGTGCGCTACCTCGAGTGCTCGGCCCTGCAGCAGGACGGCGTCAAGGAAG TGTTTGCTGAGGCCGTCCGGGCCGTGCTCAACCCCACGCCCATCAAGCGTGGGCGGTCCT GCGTCCTCTTGTGACCCTGGCACTCAGCTTGGAGGCTGCCCCTGCCCCCCACCAGTTGTG CCTTTGTGCCTTGGCGCCTTGTCTGCCCCCAGCTGTGCCTTAAGGACTAATCCTGGCACC CCTTGCCAGGGGGCTCCCCGAATGCCTTTCGCTCCTTAAGGAGGCCCATGGGGAGAGGGG CTTTGGGCCCCACCCCACTCCGTCTGGGAGCACCAGGTATTCTTGAGAGCTCCCCCAGGC CGAGGTCGGACCCCTCCCCAAGAAGCCAACCCAGCGCCCCCTCCCTTCTGAGCAGCTGAT CCCGCTGTCCACGCAGATGTCGCTGCCAGTTGTGGTGCTTTCTCAGATTGGAGCTCTGGC CGTCCCCGACCTCTCCCCGCTGCTCTTGGAATCGCTCCCCTCAAGATGCTCTCCCTTCCC AAGAAGGAGCCACGGAATCCTGAGAAGATCCATGTGCCCTACCCTACGCCCCTGTGCCCA GGCCTTCTGCGCCCGCTGACTGACTTGGCCCCCACCCCACCCCCTCCGGGCTCCTGGGGG CCTCTCCTACCCCCATCAGCATCAATAAAACCTCCTGTCTCCAGTGAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAGCCGCTGCCGCCGCCCCCAGCTCCCCCGCAGCGGGGAGGGCACCAGGCCAGAAGGGG AGGGAGGCACAGCCTCCGCTGCAGCAGCCGCACCCGCGATGCAGAGCATCAAGTGCGTGG TGGTGGGCGATGGCGCCGTGGGCAAGACGTGCCTGCTCATCTGCTACACGACCAACGCCT TCCCCAAGGAGTACATCCCCACAGTGTTCGACAATTACAGCGCCCAGAGCGCAGTCGACG GGCGCACCGTGAACCTGAACCTGTGGGACACAGCGGGCCAGGAGGAGTACGACCGCCTCC GCACACTCTCCTACCCTCAGACCAACGTCTTCGTCATCTGTTTCTCCATCGCCAGTCCGC CCTCCTATGAGAATGTGCGGCACAAGTGGCATCCAGAGGTGTGCCACCACTGCCCCGACG TGCCCATCCTCCTGGTGGGCACCAAGAAGGACCTGAGATCCCAGCCTGACACCCTACGGC GCCTCAAGGAGCAGGGCCAGGCGCCCATCACGCCGCAGCAGGGCCAGGCGCTGGCCAAGC AGATCCACGCTGTGCGCTACCTCGAGTGCTCGGCCCTGCAGCAGGACGGCGTCAAGGAAG TGTTTGCTGAGGCCGTCCGGGCCGTGCTCAACCCCACGCCCATCAAGCGTGGGCGGTCCT GCGTCCTCTTGTGACCCTGGCACTCAGCTTGGAGGCTGCCCCTGCCCCCCACCAGTTGTG CCTTTGTGCCTTGGCGCCTTGTCTGCCCCCAGCTGTGCCTTAAGGACTAATCCTGGCACC CCTTGCCAGGGGGCTCCCCGAATGCCTTTCGCTCCTTAAGGAGGCCCATGGGGAGAGGGG CTTTGGGCCCCACCCCACTCCGTCTGGGAGCACCAGGTATTCTTGAGAGCTCCCCCAGGC CGAGGTCGGACCCCTCCCCAAGAAGCCAACCCAGCGCCCCCTCCCTTCTGAGCAGCTGAT CCCGCTGTCCACGCAGATGTCGCTGCCAGTTGTGGTGCTTTCTCAGATTGGAGCTCTGGC CGTCCCCGACCTCTCCCCGCTGCTCTTGGAATCGCTCCCCTCAAGATGCTCTCCCTTCCC AAGAAGGAGCCACGGAATCCTGAGAAGATCCATGTGCCCTACCCTACGCCCCTGTGCCCA GGCCTTCTGCGCCCGCTGACTGACTTGGCCCCCACCCCACCCCCTCCGGGCTCCTGGGGG CCTCTCCTACCCCCATCAGCATCAATAAAACCTCCTGTCTCCAGTGAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 51-169, - strand, RNAz p=0.759 | |
| 330-489, - strand, RNAz p=0.736068 | |
| 690-888, - strand, RNAz p=0.999976 | |
| 1127-1246, - strand, RNAz p=0.997305 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 51-169, - strand, RNAz p=0.759 | |
| 330-489, - strand, RNAz p=0.736068 | |
| 690-888, - strand, RNAz p=0.999976 | |
| 1127-1246, - strand, RNAz p=0.997305 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 51-888, gnl|bosTau2|chr15 (32927044-32926210) | |
| 51-888, gnl|Hg17|chr11 (3805992-3805144) | |
| 51-888, gnl|Mm7|chr7 (98286392-98285548) | |
| 106-628, gnl|bosTau2|chr11 (61538111-61538633) | |
| 106-628, gnl|Hg17|chr2 (20568868-20569390) | |
| 106-628, gnl|Mm7|chr12 (8525652-8525130) | |
| 907-1246, gnl|bosTau2|chr15 (32926209-32925872) | |
| 907-1246, gnl|canFam2|chr21 (29377674-29378183) | |
| 907-1246, gnl|canFam2|chr21 (29378393-29378054) | |
| 907-1246, gnl|dasNov1|scaffold_8636 (741-1219) | |
| 907-1246, gnl|dasNov1|scaffold_8636 (1423-1087) | |
| 907-1246, gnl|echTel1|scaffold_312719 (88583-88101) | |
| 907-1246, gnl|echTel1|scaffold_312719 (87901-88207) | |
| 907-1246, gnl|hg17|chr11 (3804544-3805023) | |
| 907-1246, gnl|Hg17|chr11 (3805125-3804784) | |
| 907-1246, gnl|hg17|chr4 (57503016-57503330) | |
| 907-1246, gnl|loxAfr1|scaffold_8437 (36295-35812) | |
| 907-1246, gnl|loxAfr1|scaffold_8437 (35612-35935) | |
| 907-1246, gnl|mm7|chr5 (77122956-77123283) | |
| 907-1246, gnl|mm7|chr7 (98284987-98285449) | |
| 907-1246, gnl|Mm7|chr7 (98285547-98285223) | |
| 907-1246, gnl|monDom2|scaffold_74 (6950919-6951524) | |
| 907-1246, gnl|oryCun1|scaffold_210944 (98454-98946) | |
| 907-1246, gnl|oryCun1|scaffold_210944 (99142-98813) | |
| 907-1246, gnl|panTro1|chr3_random (45816627-45816310) | |
| 907-1246, gnl|panTro1|chr9_random (16060275-16059796) | |
| 907-1246, gnl|rheMac2|chr14 (69719051-69718572) | |
| 907-1246, gnl|rheMac2|chr5 (72568965-72568648) | |
| 907-1246, gnl|rn3|chr1 (159802808-159803261) | |
| 907-1246, gnl|rn3|chr14 (33261168-33260869) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 51-888, gnl|bosTau2|chr15 (32927044-32926210) | |
| 51-888, gnl|Hg17|chr11 (3805992-3805144) | |
| 51-888, gnl|Mm7|chr7 (98286392-98285548) | |
| 106-628, gnl|bosTau2|chr11 (61538111-61538633) | |
| 106-628, gnl|Hg17|chr2 (20568868-20569390) | |
| 106-628, gnl|Mm7|chr12 (8525652-8525130) | |
| 907-1246, gnl|bosTau2|chr15 (32926209-32925872) | |
| 907-1246, gnl|canFam2|chr21 (29377674-29378183) | |
| 907-1246, gnl|canFam2|chr21 (29378393-29378054) | |
| 907-1246, gnl|dasNov1|scaffold_8636 (741-1219) | |
| 907-1246, gnl|dasNov1|scaffold_8636 (1423-1087) | |
| 907-1246, gnl|echTel1|scaffold_312719 (88583-88101) | |
| 907-1246, gnl|echTel1|scaffold_312719 (87901-88207) | |
| 907-1246, gnl|hg17|chr11 (3804544-3805023) | |
| 907-1246, gnl|Hg17|chr11 (3805125-3804784) | |
| 907-1246, gnl|hg17|chr4 (57503016-57503330) | |
| 907-1246, gnl|loxAfr1|scaffold_8437 (36295-35812) | |
| 907-1246, gnl|loxAfr1|scaffold_8437 (35612-35935) | |
| 907-1246, gnl|mm7|chr5 (77122956-77123283) | |
| 907-1246, gnl|mm7|chr7 (98284987-98285449) | |
| 907-1246, gnl|Mm7|chr7 (98285547-98285223) | |
| 907-1246, gnl|monDom2|scaffold_74 (6950919-6951524) | |
| 907-1246, gnl|oryCun1|scaffold_210944 (98454-98946) | |
| 907-1246, gnl|oryCun1|scaffold_210944 (99142-98813) | |
| 907-1246, gnl|panTro1|chr3_random (45816627-45816310) | |
| 907-1246, gnl|panTro1|chr9_random (16060275-16059796) | |
| 907-1246, gnl|rheMac2|chr14 (69719051-69718572) | |
| 907-1246, gnl|rheMac2|chr5 (72568965-72568648) | |
| 907-1246, gnl|rn3|chr1 (159802808-159803261) | |
| 907-1246, gnl|rn3|chr14 (33261168-33260869) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cga (0.558191) | |
| jca (0.45584) | |
| hyp (0.42851) | |
| fty (0.351679) | |
| ill (0.351185) | |
| lnt (0.284616) | |
| nca (0.273748) | |
| fce (0.271592) | |
| jej (0.197844) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cag (0.151194) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| med (0.116252) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.558191) | |
| jca (0.45584) | |
| hyp (0.42851) | |
| fty (0.351679) | |
| ill (0.351185) | |
| lnt (0.284616) | |
| nca (0.273748) | |
| fce (0.271592) | |
| jej (0.197844) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cag (0.151194) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| med (0.116252) |