Non-Coding RNA Search

Ss1.1-Pig4-TMW8041D05.3

Sequence:


               
               TTTAAATGAAGGCTAATACTTTGACAACTATAAAGCTGACAGCTACCTTTATTCCACCTC
CTAACTCTCAACATTTAGAGATAGATGTTTTTTTCTTTTAGACTGCAGAACCTAAAGTAA
CCTCTTTAAATTGTCCACATATTTTTCCTCACATTTTGCCCTAGCTTTAATAATAATAAA
TAGTTCAAATTAAGCACTTGTCATATGTATAAATTAATAGATTGTGAACACAGGTCTGTA
ATTGAAGAATTATAATGTCTGTTTGCCTCTTCATATAAATCTTGATTTGAAAACAAGATT
GGCCATAGATAACAGGAGTTATTTCCCATCAAATCATTAAATGTTACCGGCATCCTCCCA
AAGAAAGAATTACCTTTAAAGGTTCATTGGATAGTTCCCACTGTGGTGCAAAGGGATCAG
CGGCATCTCCACAGCGCCAGGACACAGGTTTGATCCCCTGTCCAGCACAGTGGGTTAAAG
GACATTCTGCAGCATAGGTCACAACTGTGGCTCAGATCTGATCCCTGGCCCAGGAGCTCC
ATATGCCTCAGGGCAGCCAAAAAAGAAAAAAAAAAAAAAAGTTAACTGGCAGCACTGACT
TGTGTGGAAAATACACATCTATATGTATTTGTATATGTGTGTGTTTAATATGTATTTGCC
TGTATTTGTGAAATTGTATCAACAACCATCTTAAAATACCTGATATAATTTAGTTTTTCA
ACTTCTAAACTATTTGAAGTTCCCTGGGATTTTGGCACCTGAAATCTTTTTATAACTTCG
TGACAACTTTCAGTTAGGATACCTATTATGACCTTTCTATTTGGTAATATTTTCTTTATA
AAAAGAAATACAGTTCCTCAATTTCCTTCTCCAGGCATTCAAATTTTAGTCCCAAGTTTA
TAATTTTTGTTTTAAATTATTCAGTTCACAATGGACAGTTACTCAAACTTTAATATCTCT
TTTACCTAACTAATGAAAGTAACTTGTTCTAATTTATGAAAGAAAAATTTTAATAGACAA
TAAAATATTAATTTCTGTGAAAGTAATAAGACAAATGTGTAAAAATTATTTTAAAGCTTG
TTTTTCATAGATGTTGACCTATGGGTACAAGACTAAAACCTGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAAATGAAGGCTAATACTTTGACAACTATAAAGCTGACAGCTACCTTTATTCCACCTC
CTAACTCTCAACATTTAGAGATAGATGTTTTTTTCTTTTAGACTGCAGAACCTAAAGTAA
CCTCTTTAAATTGTCCACATATTTTTCCTCACATTTTGCCCTAGCTTTAATAATAATAAA
TAGTTCAAATTAAGCACTTGTCATATGTATAAATTAATAGATTGTGAACACAGGTCTGTA
ATTGAAGAATTATAATGTCTGTTTGCCTCTTCATATAAATCTTGATTTGAAAACAAGATT
GGCCATAGATAACAGGAGTTATTTCCCATCAAATCATTAAATGTTACCGGCATCCTCCCA
AAGAAAGAATTACCTTTAAAGGTTCATTGGATAGTTCCCACTGTGGTGCAAAGGGATCAG
CGGCATCTCCACAGCGCCAGGACACAGGTTTGATCCCCTGTCCAGCACAGTGGGTTAAAG
GACATTCTGCAGCATAGGTCACAACTGTGGCTCAGATCTGATCCCTGGCCCAGGAGCTCC
ATATGCCTCAGGGCAGCCAAAAAAGAAAAAAAAAAAAAAAGTTAACTGGCAGCACTGACT
TGTGTGGAAAATACACATCTATATGTATTTGTATATGTGTGTGTTTAATATGTATTTGCC
TGTATTTGTGAAATTGTATCAACAACCATCTTAAAATACCTGATATAATTTAGTTTTTCA
ACTTCTAAACTATTTGAAGTTCCCTGGGATTTTGGCACCTGAAATCTTTTTATAACTTCG
TGACAACTTTCAGTTAGGATACCTATTATGACCTTTCTATTTGGTAATATTTTCTTTATA
AAAAGAAATACAGTTCCTCAATTTCCTTCTCCAGGCATTCAAATTTTAGTCCCAAGTTTA
TAATTTTTGTTTTAAATTATTCAGTTCACAATGGACAGTTACTCAAACTTTAATATCTCT
TTTACCTAACTAATGAAAGTAACTTGTTCTAATTTATGAAAGAAAAATTTTAATAGACAA
TAAAATATTAATTTCTGTGAAAGTAATAAGACAAATGTGTAAAAATTATTTTAAAGCTTG
TTTTTCATAGATGTTGACCTATGGGTACAAGACTAAAACCTGCAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               4-390, gnl|bosTau2|chr1 (63227582-63227198)
               


               
               577-1124, gnl|bosTau2|chr1 (63227210-63226661)
               

               
               577-1124, gnl|Hg17|chr3 (170993597-170994164)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-390, gnl|bosTau2|chr1 (63227582-63227198)
               


               
               577-1124, gnl|bosTau2|chr1 (63227210-63226661)
               

               
               577-1124, gnl|Hg17|chr3 (170993597-170994164)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	4-390, gnl\|bosTau2\|chr1 (63227582-63227198)

	577-1124, gnl\|bosTau2\|chr1 (63227210-63226661)
	577-1124, gnl\|Hg17\|chr3 (170993597-170994164)