Ss1.1-Pig4-TMW8041E09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGAGATACGTAGGCGAGTTAAGTCCTGGTCTGCGGGGAGGCAGACGGCTCCGTCGCAGA CTACGGACCTCTTTGGGTCTCAGCTGCCAAAGATCCTGTCCGGTAGGTGAGTGGCTCACT TTGAGGGAAAGCCTTCTCGGATCGAGGCTTCTTCATGGCCGCTCAGATCGCGAGTGGTCA GGGCTGCTCTCTGTGCGGAGGACGGCGTCCACTGAGCGCAGTTTACTCTAGGAAGTACTA GCCGCACATCATGAGTGGCTGTCGAGTATTCATCGGGAGGCTAAATCCAGCGGCCAGGGA GAAAGACGTGGAAAGGTTCTTCAAGGGGTATGGACGAATAAGAGATATTGATCTGAAAAG AGGCTTTGGTTTTGTGGAATTTGAGGATCCCAGGGATGCAGATGATGCTGTATATGAACT TGATGGAAAAGAACTCTGCAGTGAAAGGGTTACAATTGAACATGCTAGGGCTCGATCTCG AGGTGGAAGAGGTAGAGGACGCTACTCAGACCGTTTTAGTAGTCGCAGACCTCGAAATGA TAGACGAAATGCTCCACCTGTAAGAACAGAAAATCGGCTTATAGTTGAGAATTTATCTTC AAGAGTCAGCTGGCAGGATCTCAAAGATTTCATGAGACAAGCTGGGGAAGTAACATTTGC GGATGCACATAGACCTAAGTTAAATGAAGGGGTAGTTGAGTTTGCCTCTTATGGTGATTT AAAGAATGCTATTGAAAAACTTTCTGGAAAAGAAATAAATGGGAGAAAAATCAAATTAAT TGAAGGCAGCAAAAGGCACAGGTCACGAAGCAGGTCTCGTTCTCGGACCAGGAGTTCCTC AAGGTCTCGTAGCCGATCTCGTTCCCGGAGGAGCAAGTCTTACAGCCGGTCTAGGAGCCG GAGCCGGAGCCGGAGCAAGTCCCGTTCTGTTAGTAGGTCTCCTGTGCCTGAGAAGAGCCA GAAACGTGGTTCTTCAAGTAGATCTAAGTCTCCAGCATCTGTAGATCGCCAGAGGTCCAG GTCCCGGTCCCGGTCCCGGTCAAGGTCCAGATCAGTTGACAGTGGCAATTAAACTGTAAA TAACTTGCCCTGGGGGCCTTTTTTTTTTATAAAACAAAAACAAAAAACAAATTCCCAAAC CATACTTGCTAAAAACTCTGGTAAGTATGTGCTTTTCTGTGGGGGTGGGATTTGGAGGGG GGTTGGGTTGGGCTGGGCTGGGCTGGCTATCTTTGTAGATGTGGACCACCAAGGGGTTGT TGAAAACTAATTGTATTAAATGTCTTTTGATAAGCCTTCTGCTCACATTTTTGTGAATGT CTGAAGTATATATAGTTTGTGTATATTCACAGAGCTCTTTTATAACTAAAGCAAATTTAA TTTTTTTGTACTAGAAAAAATTTGAACGTTTTAGTTCCTGGTTATTCAAATATGTTAAGA TTTAGTTTAAAGACTAATTAATAGCTTTGGACACTTAAAAGAGCTCTAAATTTGCTTGTA CATAAAGGCTTAATTTGAGTTTTCCTTGTTAGGGTCAAGGGTGTCCATCCACCCTTTAAC AGCTGCCTAGCAAAGTCGTTAAAGGCAGCTGTTTGTTATTGATAATAAAAGATTCTAAAA ATTGAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGAGATACGTAGGCGAGTTAAGTCCTGGTCTGCGGGGAGGCAGACGGCTCCGTCGCAGA CTACGGACCTCTTTGGGTCTCAGCTGCCAAAGATCCTGTCCGGTAGGTGAGTGGCTCACT TTGAGGGAAAGCCTTCTCGGATCGAGGCTTCTTCATGGCCGCTCAGATCGCGAGTGGTCA GGGCTGCTCTCTGTGCGGAGGACGGCGTCCACTGAGCGCAGTTTACTCTAGGAAGTACTA GCCGCACATCATGAGTGGCTGTCGAGTATTCATCGGGAGGCTAAATCCAGCGGCCAGGGA GAAAGACGTGGAAAGGTTCTTCAAGGGGTATGGACGAATAAGAGATATTGATCTGAAAAG AGGCTTTGGTTTTGTGGAATTTGAGGATCCCAGGGATGCAGATGATGCTGTATATGAACT TGATGGAAAAGAACTCTGCAGTGAAAGGGTTACAATTGAACATGCTAGGGCTCGATCTCG AGGTGGAAGAGGTAGAGGACGCTACTCAGACCGTTTTAGTAGTCGCAGACCTCGAAATGA TAGACGAAATGCTCCACCTGTAAGAACAGAAAATCGGCTTATAGTTGAGAATTTATCTTC AAGAGTCAGCTGGCAGGATCTCAAAGATTTCATGAGACAAGCTGGGGAAGTAACATTTGC GGATGCACATAGACCTAAGTTAAATGAAGGGGTAGTTGAGTTTGCCTCTTATGGTGATTT AAAGAATGCTATTGAAAAACTTTCTGGAAAAGAAATAAATGGGAGAAAAATCAAATTAAT TGAAGGCAGCAAAAGGCACAGGTCACGAAGCAGGTCTCGTTCTCGGACCAGGAGTTCCTC AAGGTCTCGTAGCCGATCTCGTTCCCGGAGGAGCAAGTCTTACAGCCGGTCTAGGAGCCG GAGCCGGAGCCGGAGCAAGTCCCGTTCTGTTAGTAGGTCTCCTGTGCCTGAGAAGAGCCA GAAACGTGGTTCTTCAAGTAGATCTAAGTCTCCAGCATCTGTAGATCGCCAGAGGTCCAG GTCCCGGTCCCGGTCCCGGTCAAGGTCCAGATCAGTTGACAGTGGCAATTAAACTGTAAA TAACTTGCCCTGGGGGCCTTTTTTTTTTATAAAACAAAAACAAAAAACAAATTCCCAAAC CATACTTGCTAAAAACTCTGGTAAGTATGTGCTTTTCTGTGGGGGTGGGATTTGGAGGGG GGTTGGGTTGGGCTGGGCTGGGCTGGCTATCTTTGTAGATGTGGACCACCAAGGGGTTGT TGAAAACTAATTGTATTAAATGTCTTTTGATAAGCCTTCTGCTCACATTTTTGTGAATGT CTGAAGTATATATAGTTTGTGTATATTCACAGAGCTCTTTTATAACTAAAGCAAATTTAA TTTTTTTGTACTAGAAAAAATTTGAACGTTTTAGTTCCTGGTTATTCAAATATGTTAAGA TTTAGTTTAAAGACTAATTAATAGCTTTGGACACTTAAAAGAGCTCTAAATTTGCTTGTA CATAAAGGCTTAATTTGAGTTTTCCTTGTTAGGGTCAAGGGTGTCCATCCACCCTTTAAC AGCTGCCTAGCAAAGTCGTTAAAGGCAGCTGTTTGTTATTGATAATAAAAGATTCTAAAA ATTGAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 1-213, + strand, RNAz p=0.990137 | |
| 879-992, - strand, RNAz p=0.758671 | |
| 1073-1232, - strand, RNAz p=0.976478 | |
| 1496-1620, + strand, RNAz p=0.999953 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-213, + strand, RNAz p=0.990137 | |
| 879-992, - strand, RNAz p=0.758671 | |
| 1073-1232, - strand, RNAz p=0.976478 | |
| 1496-1620, + strand, RNAz p=0.999953 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of U30827, + | |
| 3' of U30827, + |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-232, gnl|bosTau2|chr10 (55865113-55864882) | |
| 1-232, gnl|Hg17|chr14 (69303620-69303851) | |
| 1-232, gnl|Mm7|chr12 (78908328-78908585) | |
| 446-551, gnl|bosTau2|chr10 (55863462-55863357) | |
| 446-551, gnl|canFam2|chr8 (46551144-46551223) | |
| 446-551, gnl|danRer3|chr20 (37499640-37499727) | |
| 446-551, gnl|dasNov1|scaffold_21262 (1086-1165) | |
| 446-551, gnl|echTel1|scaffold_183441 (6350-6433) | |
| 446-551, gnl|fr1|chrUn (204088953-204089035) | |
| 446-551, gnl|galGal2|chr5 (24788425-24788343) | |
| 446-551, gnl|hg17|chr14 (69305258-69305337) | |
| 446-551, gnl|Hg17|chr14 (69305266-69305371) | |
| 446-551, gnl|loxAfr1|scaffold_17180 (30825-30908) | |
| 446-551, gnl|mm7|chr12 (78910272-78910351) | |
| 446-551, gnl|Mm7|chr12 (78910280-78910385) | |
| 446-551, gnl|monDom2|scaffold_8 (86486835-86486913) | |
| 446-551, gnl|oryCun1|scaffold_187977 (7150-7073) | |
| 446-551, gnl|panTro1|chr15 (68982852-68982931) | |
| 446-551, gnl|rheMac2|chr7 (132902977-132903056) | |
| 446-551, gnl|rn3|chr6 (104733437-104733513) | |
| 446-551, gnl|tetNig1|chr14 (4551898-4551809) | |
| 446-551, gnl|xenTro1|scaffold_218 (219039-219127) | |
| 615-723, gnl|bosTau2|chr10 (55861784-55861675) | |
| 615-723, gnl|canFam2|chr8 (46552848-46552956) | |
| 615-723, gnl|danRer3|chr20 (37504835-37504922) | |
| 615-723, gnl|dasNov1|scaffold_2766 (74642-74572) | |
| 615-723, gnl|echTel1|scaffold_183441 (8032-8142) | |
| 615-723, gnl|fr1|chrUn (204090383-204090473) | |
| 615-723, gnl|galGal2|chr5 (24786594-24786498) | |
| 615-723, gnl|hg17|chr14 (69306930-69307036) | |
| 615-723, gnl|Hg17|chr14 (69306935-69307042) | |
| 615-723, gnl|loxAfr1|scaffold_17180 (32490-32600) | |
| 615-723, gnl|mm7|chr12 (78911874-78911978) | |
| 615-723, gnl|Mm7|chr12 (78911879-78911977) | |
| 615-723, gnl|monDom2|scaffold_8 (86488295-86488397) | |
| 615-723, gnl|oryCun1|scaffold_187977 (5463-5353) | |
| 615-723, gnl|panTro1|chr15 (68984524-68984630) | |
| 615-723, gnl|rheMac2|chr7 (132904666-132904772) | |
| 615-723, gnl|rn3|chr6 (104735016-104735102) | |
| 615-723, gnl|tetNig1|chr14 (4550455-4550365) | |
| 615-723, gnl|xenTro1|scaffold_218 (220907-220984) | |
| 800-1620, gnl|bosTau2|chr10 (55860750-55859947) | |
| 800-1620, gnl|Hg17|chr14 (69307665-69308472) | |
| 800-1620, gnl|Mm7|chr12 (78912504-78913289) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-232, gnl|bosTau2|chr10 (55865113-55864882) | |
| 1-232, gnl|Hg17|chr14 (69303620-69303851) | |
| 1-232, gnl|Mm7|chr12 (78908328-78908585) | |
| 446-551, gnl|bosTau2|chr10 (55863462-55863357) | |
| 446-551, gnl|canFam2|chr8 (46551144-46551223) | |
| 446-551, gnl|danRer3|chr20 (37499640-37499727) | |
| 446-551, gnl|dasNov1|scaffold_21262 (1086-1165) | |
| 446-551, gnl|echTel1|scaffold_183441 (6350-6433) | |
| 446-551, gnl|fr1|chrUn (204088953-204089035) | |
| 446-551, gnl|galGal2|chr5 (24788425-24788343) | |
| 446-551, gnl|hg17|chr14 (69305258-69305337) | |
| 446-551, gnl|Hg17|chr14 (69305266-69305371) | |
| 446-551, gnl|loxAfr1|scaffold_17180 (30825-30908) | |
| 446-551, gnl|mm7|chr12 (78910272-78910351) | |
| 446-551, gnl|Mm7|chr12 (78910280-78910385) | |
| 446-551, gnl|monDom2|scaffold_8 (86486835-86486913) | |
| 446-551, gnl|oryCun1|scaffold_187977 (7150-7073) | |
| 446-551, gnl|panTro1|chr15 (68982852-68982931) | |
| 446-551, gnl|rheMac2|chr7 (132902977-132903056) | |
| 446-551, gnl|rn3|chr6 (104733437-104733513) | |
| 446-551, gnl|tetNig1|chr14 (4551898-4551809) | |
| 446-551, gnl|xenTro1|scaffold_218 (219039-219127) | |
| 615-723, gnl|bosTau2|chr10 (55861784-55861675) | |
| 615-723, gnl|canFam2|chr8 (46552848-46552956) | |
| 615-723, gnl|danRer3|chr20 (37504835-37504922) | |
| 615-723, gnl|dasNov1|scaffold_2766 (74642-74572) | |
| 615-723, gnl|echTel1|scaffold_183441 (8032-8142) | |
| 615-723, gnl|fr1|chrUn (204090383-204090473) | |
| 615-723, gnl|galGal2|chr5 (24786594-24786498) | |
| 615-723, gnl|hg17|chr14 (69306930-69307036) | |
| 615-723, gnl|Hg17|chr14 (69306935-69307042) | |
| 615-723, gnl|loxAfr1|scaffold_17180 (32490-32600) | |
| 615-723, gnl|mm7|chr12 (78911874-78911978) | |
| 615-723, gnl|Mm7|chr12 (78911879-78911977) | |
| 615-723, gnl|monDom2|scaffold_8 (86488295-86488397) | |
| 615-723, gnl|oryCun1|scaffold_187977 (5463-5353) | |
| 615-723, gnl|panTro1|chr15 (68984524-68984630) | |
| 615-723, gnl|rheMac2|chr7 (132904666-132904772) | |
| 615-723, gnl|rn3|chr6 (104735016-104735102) | |
| 615-723, gnl|tetNig1|chr14 (4550455-4550365) | |
| 615-723, gnl|xenTro1|scaffold_218 (220907-220984) | |
| 800-1620, gnl|bosTau2|chr10 (55860750-55859947) | |
| 800-1620, gnl|Hg17|chr14 (69307665-69308472) | |
| 800-1620, gnl|Mm7|chr12 (78912504-78913289) |
| Expressed library(ies): 48 entry(ies) | More info |
| Expressed library(ies): 48 entry(ies) | Help | Less info |
| nje (0.49776) | |
| cje (0.495704) | |
| med (0.465008) | |
| mas (0.42061) | |
| tes (0.415628) | |
| che (0.408942) | |
| pla (0.401016) | |
| pgl (0.35545) | |
| fty (0.351679) | |
| cbl (0.344392) | |
| cki (0.330469) | |
| sme (0.305437) | |
| ski (0.29347) | |
| spl (0.286369) | |
| cst (0.280073) | |
| nca (0.273748) | |
| ste (0.270416) | |
| ute (0.265569) | |
| bla (0.248694) | |
| ecc (0.23007) | |
| spc (0.226732) | |
| hea (0.204499) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| eye (0.170503) | |
| cut (0.169924) | |
| csp (0.161186) | |
| lun (0.150489) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| jca (0.11396) |
| Expressed library(ies): 48 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.49776) | |
| cje (0.495704) | |
| med (0.465008) | |
| mas (0.42061) | |
| tes (0.415628) | |
| che (0.408942) | |
| pla (0.401016) | |
| pgl (0.35545) | |
| fty (0.351679) | |
| cbl (0.344392) | |
| cki (0.330469) | |
| sme (0.305437) | |
| ski (0.29347) | |
| spl (0.286369) | |
| cst (0.280073) | |
| nca (0.273748) | |
| ste (0.270416) | |
| ute (0.265569) | |
| bla (0.248694) | |
| ecc (0.23007) | |
| spc (0.226732) | |
| hea (0.204499) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| eye (0.170503) | |
| cut (0.169924) | |
| csp (0.161186) | |
| lun (0.150489) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| jca (0.11396) |