Non-Coding RNA Search

Ss1.1-Pig4-TMW8041E16.5

Sequence:


               
               CCCCACCCCCACCCCCGACTCCCAAGTAGCACACAGCGGCGGGGGCAGGACCAGGAATGG
GTGTGTTTGTGTGCCAATGACCCGGTGCGCCATCTCAGCTCGTCACCCGGCCCTGCGTCC
GCCTGAGGGAACTTGCACACAATCCCCAGAAGGTCCGGCCAAGTGGACAGATTTCCTTCT
CCTTCTGCCCGTGCTCAGTCTCCGCGGAGGCTGGCCTGCCTGCTCAGATGACAGCGTGCG
CTTCTCTGGTTTAAGCAGTGATACCATTTTGAAAGTTGGAAGCCTCAAACTGAGATGACA
GTGCAGAACAAAAATGGGTTAGGGTCATTACAATTGAAGTGTTCTTCTTAGGGCGAAAAT
GTTGACTCTGAGTGTTGTCTGAATGTGCTATGAGAAACTTCCAAAGAGCACCACTCACAA
TTTGGAATGTTCAGAGAAGGTTCCAGCCCTCCAAAGGGCAACTCTTTAGAGTAGTCCGTG
TTGGCTTTTATCAAAACCTTGTATAAATTGGGAAAACTGATAGAGGGGAGGAAGAGGCGT
GAAAAGGACGAGAAGGCAAAAACACCAGCCAAACAAAAGCCAGGACAAAAAAAGATTTTT
CTTAACCAATATAGACTTTAAAATGACATCAGACGTAAAAGTTAGCCTCTGAACACTTAA
TGCATGTGGTCCATCTGTCTCTGCCTGGTGTCTTTACGAATACCCTCTTTGGGCTCTGAA
ATTTCAAGAGTGATTTCTGTCCACACCAAGTTGTGAGTATTCTTAGAAATTTCTACAAGA
AAAAAAAAAATCAAATGAAAAGGAAAATTGCTCAACACAAGTTACGGATAGCTGCTCGAA
TTCAGCCCCTCCCTGTCGTGTCAGGACCACACCACAACTTGGAAGAAATTAGTCAAATAT
TTGTTTTCCTGCTTCCCTTTTCAACTGTTACTGTGCTTTGTTTGGCAATAGTTTTCTCTG
ATTAACTCATTGCTTATATTGTGAAGAATGAAGGTTTTGTGTTTCAAATATATTGCATTG
CAAAGATAGTTTCACTGAAGTCATGCACCATTAAATAAGATGAAATATTTGTATTTATTG
TCCTACTTCCTAAGCTGTTAACTTGTTTTATTCTCTGTGAATTTGCATTGAGTCTGTCCC
GTGCCCTGTATTCCAAATGGCGTTTGTGTTTCCTCTCGTTCATCATTAAATGGGGACAGA
TTCCAGGAGATTCCACCTTTATCAAGTTGACTCTCCTTTGTCTGCCTTCCATTATGAGAT
TGTTTTTCCTTCCCCTTTCCCTAAGAGGCTGACAGATCTAGGTGTAAATCAAGTGGAGAC
CTGTCTCTGGTCTGTCTTCCTCCCTTCCTTCCCTCCCTCCCTTTCTTTCCTCTTTTTCCA
TGCTTAGTTTCACTGTGTAAATTAGGTATTAACTGCACTTCTTTTAAAAAAAAAAAATCT
CCCTGTTACCTCCTTGAAAGAGTCACTTCTATAGGCCTTTTTCAATAGGCTCATGACTGC
AGATAAGGAAAAAACAAGTAAAAACAAAACTACGTGCCTAAAAAAATGACAAAAAAAAAT
TTTGTAACCTTTAAAAAAGAAACCTGAATAGCCTTTAATTCTTGAATATGCTTAAATTGT
ATGTAAATCGGTTTTTGCCACGTATGTTTGTTCACATTCTAAGTGACTTAATGGGATCCT
CACAGTCTGTGTCTTTGTGTCACGTGTATAAGATGGGCTTGTGATGTAAGCGTTTCATCT
GGTCAGTGGTTCCTTTGATATTGTACTGCTGCTGGGAGTGGGCTGGGGAGCCTGCCTTTG
GGCAGTAGGTTCCTCTTGGGTAGGTAGGAGAGATGGGGGCGGTGGGGGGCAAATTCTCAC
ATACGTTTTCCTAACCTATTTGCAGAAACTTTCAAAGGCATTTGGTTAAACCTCTTGGCA
GTACAGTATTCTTGTATTTGTTAACGTCTGTGTTTAGGTACTGGTACCTTTTGTTTAAAA
ATGTTCTAAGTGTTGGCTTTAAAGTGAATTTATCTTTAGTATGATAGTTATATGAAAATT
ATAGGGTTTGTGTGCAGAGAATTTTTTTATAAAGTGCTTTGTAAAAAAAAAAAAAATGTA
TTCTAGCTTTCGCGGTACATATGTGTGATAACTGTAATATCCATGACAGTTAAGTGCAAT
TATTTCATCACTCTAAAAATGCTATTTTTGTGTCAGTTCCTGCAGGTGTTTTCATGTCTT
TGCAAAGTGACACATTTTGATGCCTTCTTGATAAAGTGGTAGACATTTTGTAGCTTTCTA
GAAACTTTGTATTCATACGGTATCAATGAAAAATAAAGAAAATGAAAGTGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCACCCCCACCCCCGACTCCCAAGTAGCACACAGCGGCGGGGGCAGGACCAGGAATGG
GTGTGTTTGTGTGCCAATGACCCGGTGCGCCATCTCAGCTCGTCACCCGGCCCTGCGTCC
GCCTGAGGGAACTTGCACACAATCCCCAGAAGGTCCGGCCAAGTGGACAGATTTCCTTCT
CCTTCTGCCCGTGCTCAGTCTCCGCGGAGGCTGGCCTGCCTGCTCAGATGACAGCGTGCG
CTTCTCTGGTTTAAGCAGTGATACCATTTTGAAAGTTGGAAGCCTCAAACTGAGATGACA
GTGCAGAACAAAAATGGGTTAGGGTCATTACAATTGAAGTGTTCTTCTTAGGGCGAAAAT
GTTGACTCTGAGTGTTGTCTGAATGTGCTATGAGAAACTTCCAAAGAGCACCACTCACAA
TTTGGAATGTTCAGAGAAGGTTCCAGCCCTCCAAAGGGCAACTCTTTAGAGTAGTCCGTG
TTGGCTTTTATCAAAACCTTGTATAAATTGGGAAAACTGATAGAGGGGAGGAAGAGGCGT
GAAAAGGACGAGAAGGCAAAAACACCAGCCAAACAAAAGCCAGGACAAAAAAAGATTTTT
CTTAACCAATATAGACTTTAAAATGACATCAGACGTAAAAGTTAGCCTCTGAACACTTAA
TGCATGTGGTCCATCTGTCTCTGCCTGGTGTCTTTACGAATACCCTCTTTGGGCTCTGAA
ATTTCAAGAGTGATTTCTGTCCACACCAAGTTGTGAGTATTCTTAGAAATTTCTACAAGA
AAAAAAAAAATCAAATGAAAAGGAAAATTGCTCAACACAAGTTACGGATAGCTGCTCGAA
TTCAGCCCCTCCCTGTCGTGTCAGGACCACACCACAACTTGGAAGAAATTAGTCAAATAT
TTGTTTTCCTGCTTCCCTTTTCAACTGTTACTGTGCTTTGTTTGGCAATAGTTTTCTCTG
ATTAACTCATTGCTTATATTGTGAAGAATGAAGGTTTTGTGTTTCAAATATATTGCATTG
CAAAGATAGTTTCACTGAAGTCATGCACCATTAAATAAGATGAAATATTTGTATTTATTG
TCCTACTTCCTAAGCTGTTAACTTGTTTTATTCTCTGTGAATTTGCATTGAGTCTGTCCC
GTGCCCTGTATTCCAAATGGCGTTTGTGTTTCCTCTCGTTCATCATTAAATGGGGACAGA
TTCCAGGAGATTCCACCTTTATCAAGTTGACTCTCCTTTGTCTGCCTTCCATTATGAGAT
TGTTTTTCCTTCCCCTTTCCCTAAGAGGCTGACAGATCTAGGTGTAAATCAAGTGGAGAC
CTGTCTCTGGTCTGTCTTCCTCCCTTCCTTCCCTCCCTCCCTTTCTTTCCTCTTTTTCCA
TGCTTAGTTTCACTGTGTAAATTAGGTATTAACTGCACTTCTTTTAAAAAAAAAAAATCT
CCCTGTTACCTCCTTGAAAGAGTCACTTCTATAGGCCTTTTTCAATAGGCTCATGACTGC
AGATAAGGAAAAAACAAGTAAAAACAAAACTACGTGCCTAAAAAAATGACAAAAAAAAAT
TTTGTAACCTTTAAAAAAGAAACCTGAATAGCCTTTAATTCTTGAATATGCTTAAATTGT
ATGTAAATCGGTTTTTGCCACGTATGTTTGTTCACATTCTAAGTGACTTAATGGGATCCT
CACAGTCTGTGTCTTTGTGTCACGTGTATAAGATGGGCTTGTGATGTAAGCGTTTCATCT
GGTCAGTGGTTCCTTTGATATTGTACTGCTGCTGGGAGTGGGCTGGGGAGCCTGCCTTTG
GGCAGTAGGTTCCTCTTGGGTAGGTAGGAGAGATGGGGGCGGTGGGGGGCAAATTCTCAC
ATACGTTTTCCTAACCTATTTGCAGAAACTTTCAAAGGCATTTGGTTAAACCTCTTGGCA
GTACAGTATTCTTGTATTTGTTAACGTCTGTGTTTAGGTACTGGTACCTTTTGTTTAAAA
ATGTTCTAAGTGTTGGCTTTAAAGTGAATTTATCTTTAGTATGATAGTTATATGAAAATT
ATAGGGTTTGTGTGCAGAGAATTTTTTTATAAAGTGCTTTGTAAAAAAAAAAAAAATGTA
TTCTAGCTTTCGCGGTACATATGTGTGATAACTGTAATATCCATGACAGTTAAGTGCAAT
TATTTCATCACTCTAAAAATGCTATTTTTGTGTCAGTTCCTGCAGGTGTTTTCATGTCTT
TGCAAAGTGACACATTTTGATGCCTTCTTGATAAAGTGGTAGACATTTTGTAGCTTTCTA
GAAACTTTGTATTCATACGGTATCAATGAAAAATAAAGAAAATGAAAGTGAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22268020|gb|AAH26959.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22268020|gb|AAH26959.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1260-1369, - strand, RNAz p=0.68496

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1260-1369, - strand, RNAz p=0.68496

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-2330, gnl|bosTau2|chr15 (25012984-25010621)
               

               
               3-2330, gnl|Hg17|chr11 (12920534-12922853)
               

               
               3-2330, gnl|Mm7|chr7 (108820428-108822803)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-2330, gnl|bosTau2|chr15 (25012984-25010621)
               

               
               3-2330, gnl|Hg17|chr11 (12920534-12922853)
               

               
               3-2330, gnl|Mm7|chr7 (108820428-108822803)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               bfe (0.449573)
               

               
               mas (0.42061)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)
               

               
               mas (0.42061)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

	3-2330, gnl\|bosTau2\|chr15 (25012984-25010621)
	3-2330, gnl\|Hg17\|chr11 (12920534-12922853)
	3-2330, gnl\|Mm7\|chr7 (108820428-108822803)

	bfe (0.449573)
	mas (0.42061)
	vin (0.332557)
	sme (0.305437)
	ski (0.29347)
	hyp (0.285673)
	fce (0.271592)
	mgp (0.230681)
	hea (0.204499)
	fcc (0.197785)
	eje (0.197668)
	rec (0.17307)
	eye (0.170503)
	cki (0.165235)
	nco (0.161734)
	cst (0.140036)
	che (0.136314)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	ese (0.126502)
	ldo (0.0970026)