Ss1.1-Pig4-TMW8041F02.3
|
AGTAAAAGAAGAAGGTCTTGCAGAAGAAACATTAAAAGCAGCAAGGCATTTGGATTCAGT
CCTCAGTGATCACACACGAAATTCTGCTGAAGGCACAGAGTATTTCAAAATGCTTGTAGA
TGTTTTTGCTCCAGAATTTCGCAGGCCAAAGAATATACATCTCCGAAATTTTTATATCAT
TGTTCCCCCTCTGACACTCAACTTTGTAGAGCATTCCATTAGTTGCAAGGAGAAATTGAA
TAAAAAAAATAAAATTGGAGCTGCCTTTACTGATGATGGTTTTGCCATGGGAGTGGCTTA
CATTCTAAAACTTTTGGATCAGTACCAGGAATTTGACTCACTTCACTGGTTCCAGTCTGT
TAGAGAGAAGTATCTAAAGGAGATAAGAGCAGTTGCTAAACAACAGAATGTGCAGTCCAC
TAGTCAGGATGAGAAACTCCTCCAAACCATGAATCTCACTCAGAAGCGACTGGATGTTTA
TTTACAGGAATTTGAATTGCTCTATTTCTCACTGAGCAGTGCAAGAATTTTCTTCAGAGC
GGACAAGACTGCAGCTGAAGAAAACCAAGAAAAGAAAGAGAAGGAAGAGGAGACTAAAGC
AAGCAATGGAGACTTGTCCGACAGCACAGTGTCTGCAGATCCTGTTGTCAAATGATATTG
ACGGTATGCCTTGCCCCTGTGAAATCATCAGAATTCTGTGTGCAATGGATGTTAATAAGC
TAATGATGAAGTATTTCCTGAGCCACATCTCTGGGGAACATTTAGATGCTGCAACTCTCT
ACAGCAGCGCTCTAAAGTTATGTCCATCCTTCTTCCGAAGGCTCTGCTGCCACTCAGATC
TCTTGTAATCAACATGAATGTTTATAATTTGTATTTGCATAGGTCTTTGATACATATTTG
TCTCAGTCATTGGAAATTCAATGCATATACTATGTACAGCCAGTAAATATGTTTCAGCAA
AAGGAACTGAGCCTGAAATTCATGAAGCAGACATGTCACTATTCTTATAAAAGGGATATA
TGAAGATGGTTTTGATATCAGAGGTGAGACACAAGTGTTACGTGCCCTTTATGTACAGTA
TGAACTGATTCATCGTTACTTTCAGGTGTCTCGCTAGAGCTGCTCCTGTCTTTGGTGAGA
TATTTTGTAATTAGTTTACACTGCTTTGAGAACATTTAACCTCCAACAGCTGCTTTAAAT
TTCAGATTTACTTATTACTCAAGGTGGAGGAAAATACAGATAAAGCCATAGAGTCCTGCT
TGAAGCTTCCCTTTTGGTTGAAGGCGCTATGTATGAGATCAGAGAACACTGAGTGACTTC
TTACTTCTCCATCCAGACTCAGGTTTCTTTGACATTAGGTTGAATTGAAATCTTGGTGGT
GGTTTGGGCAGACTGTTTCTTTAAATCAAGTAGAATCGAAGAAATCAGATTAAGCACTGT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGTAAAAGAAGAAGGTCTTGCAGAAGAAACATTAAAAGCAGCAAGGCATTTGGATTCAGT
CCTCAGTGATCACACACGAAATTCTGCTGAAGGCACAGAGTATTTCAAAATGCTTGTAGA
TGTTTTTGCTCCAGAATTTCGCAGGCCAAAGAATATACATCTCCGAAATTTTTATATCAT
TGTTCCCCCTCTGACACTCAACTTTGTAGAGCATTCCATTAGTTGCAAGGAGAAATTGAA
TAAAAAAAATAAAATTGGAGCTGCCTTTACTGATGATGGTTTTGCCATGGGAGTGGCTTA
CATTCTAAAACTTTTGGATCAGTACCAGGAATTTGACTCACTTCACTGGTTCCAGTCTGT
TAGAGAGAAGTATCTAAAGGAGATAAGAGCAGTTGCTAAACAACAGAATGTGCAGTCCAC
TAGTCAGGATGAGAAACTCCTCCAAACCATGAATCTCACTCAGAAGCGACTGGATGTTTA
TTTACAGGAATTTGAATTGCTCTATTTCTCACTGAGCAGTGCAAGAATTTTCTTCAGAGC
GGACAAGACTGCAGCTGAAGAAAACCAAGAAAAGAAAGAGAAGGAAGAGGAGACTAAAGC
AAGCAATGGAGACTTGTCCGACAGCACAGTGTCTGCAGATCCTGTTGTCAAATGATATTG
ACGGTATGCCTTGCCCCTGTGAAATCATCAGAATTCTGTGTGCAATGGATGTTAATAAGC
TAATGATGAAGTATTTCCTGAGCCACATCTCTGGGGAACATTTAGATGCTGCAACTCTCT
ACAGCAGCGCTCTAAAGTTATGTCCATCCTTCTTCCGAAGGCTCTGCTGCCACTCAGATC
TCTTGTAATCAACATGAATGTTTATAATTTGTATTTGCATAGGTCTTTGATACATATTTG
TCTCAGTCATTGGAAATTCAATGCATATACTATGTACAGCCAGTAAATATGTTTCAGCAA
AAGGAACTGAGCCTGAAATTCATGAAGCAGACATGTCACTATTCTTATAAAAGGGATATA
TGAAGATGGTTTTGATATCAGAGGTGAGACACAAGTGTTACGTGCCCTTTATGTACAGTA
TGAACTGATTCATCGTTACTTTCAGGTGTCTCGCTAGAGCTGCTCCTGTCTTTGGTGAGA
TATTTTGTAATTAGTTTACACTGCTTTGAGAACATTTAACCTCCAACAGCTGCTTTAAAT
TTCAGATTTACTTATTACTCAAGGTGGAGGAAAATACAGATAAAGCCATAGAGTCCTGCT
TGAAGCTTCCCTTTTGGTTGAAGGCGCTATGTATGAGATCAGAGAACACTGAGTGACTTC
TTACTTCTCCATCCAGACTCAGGTTTCTTTGACATTAGGTTGAATTGAAATCTTGGTGGT
GGTTTGGGCAGACTGTTTCTTTAAATCAAGTAGAATCGAAGAAATCAGATTAAGCACTGT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
44-193, gnl|bosTau2|chr2 (80727528-80727677) |
|
44-193, gnl|Hg17|chr12 (104056244-104056393) |
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44-193, gnl|Mm7|chr10 (83129664-83129813) |
| |
|
271-488, gnl|bosTau2|chr2 (80731181-80731403) |
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271-488, gnl|Hg17|chr12 (104060329-104060553) |
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271-488, gnl|Mm7|chr10 (83132471-83132693) |
| |
|
827-1440, gnl|bosTau2|chr2 (80734089-80734697) |
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827-1440, gnl|canFam2|chr10 (36373406-36372460) |
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827-1440, gnl|echTel1|scaffold_231194 (22-897) |
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827-1440, gnl|hg17|chr12 (104063103-104064030) |
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827-1440, gnl|Hg17|chr12 (104063464-104064088) |
|
827-1440, gnl|loxAfr1|scaffold_582 (132551-133489) |
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827-1440, gnl|mm7|chr10 (83135674-83136533) |
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827-1440, gnl|Mm7|chr10 (83136012-83136594) |
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827-1440, gnl|monDom2|scaffold_34 (8078582-8077608) |
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827-1440, gnl|oryCun1|scaffold_199776 (59126-58211) |
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827-1440, gnl|panTro1|chr10 (106570817-106571744) |
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827-1440, gnl|rheMac2|chr11 (106301813-106302733) |
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827-1440, gnl|rn3|chr7 (22353940-22353115) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
44-193, gnl|bosTau2|chr2 (80727528-80727677) |
|
44-193, gnl|Hg17|chr12 (104056244-104056393) |
|
44-193, gnl|Mm7|chr10 (83129664-83129813) |
| |
|
271-488, gnl|bosTau2|chr2 (80731181-80731403) |
|
271-488, gnl|Hg17|chr12 (104060329-104060553) |
|
271-488, gnl|Mm7|chr10 (83132471-83132693) |
| |
|
827-1440, gnl|bosTau2|chr2 (80734089-80734697) |
|
827-1440, gnl|canFam2|chr10 (36373406-36372460) |
|
827-1440, gnl|echTel1|scaffold_231194 (22-897) |
|
827-1440, gnl|hg17|chr12 (104063103-104064030) |
|
827-1440, gnl|Hg17|chr12 (104063464-104064088) |
|
827-1440, gnl|loxAfr1|scaffold_582 (132551-133489) |
|
827-1440, gnl|mm7|chr10 (83135674-83136533) |
|
827-1440, gnl|Mm7|chr10 (83136012-83136594) |
|
827-1440, gnl|monDom2|scaffold_34 (8078582-8077608) |
|
827-1440, gnl|oryCun1|scaffold_199776 (59126-58211) |
|
827-1440, gnl|panTro1|chr10 (106570817-106571744) |
|
827-1440, gnl|rheMac2|chr11 (106301813-106302733) |
|
827-1440, gnl|rn3|chr7 (22353940-22353115) |
|
aor (0.195274) |
|
nep (0.183925) |
|
nje (0.16592) |
|
cki (0.165235) |
|
ski (0.146735) |
|
sug (0.127291) |
|
tra (0.123092) |
|
eru (0.120048) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
aor (0.195274) |
|
nep (0.183925) |
|
nje (0.16592) |
|
cki (0.165235) |
|
ski (0.146735) |
|
sug (0.127291) |
|
tra (0.123092) |
|
eru (0.120048) |
|
ecc (0.115035) |
|
cty (0.10408) |
