Non-Coding RNA Search

Ss1.1-Pig4-TMW8041F09.3

Sequence:


               
               CAAAATACCGCAGTCGCATCACCATTACCAGCAGCAAGGAATCTGCACTTGAGCTAAAAT
TATCCCTTTTAAAAATTTCCTGAGCTGTTTAGGGAAGTACCCTCTTCGTTAAAGGCACTG
ACTATAAGAGCACATAAAGAACTGGCTGGAGGGTTGCAAATTTTTATCAATTTAAGATGT
CACTAAAAGACTGAGAGCCTTGGCCACATAAGAGGCAGAGAAGATCCATCGACATCAGTG
AAAGAGTTACAAAGCAAACTAGAAAAAATAGGTTAGCAAGTCAAATGAAGCATATGTCCA
CATTCCAAAGGCATTTTTCTCGAGGAGGAATGTTGATATTCCCCCTTTCCATATTCCTTA
ATACAAAGAAGCTAAAATATATTTAAAGTGCTTAAACTATCAATAAAATAAATACCAAAT
CTGAAAAAAGCCTAGTAAAAAACTTTTGAAAATAATGTAAACCAGTAAGGCTTAAAGATT
TTTTTTCATTTACTAGAGGGGGAATGTACCCTATTAACAGCACAATCAAACAATTAAAAA
GTGGGTAAGGAGGAGTGTTAGAGGCATCAGTGCAGTTTCCCACCAAAAATAGGATCTAAG
CAAAAGAAAACAAAGCCTCTCCAACTTTGTGGACATGCATGTGAATGGCTCTGAGGCATT
AAGACCTGTTGGTCCGAACTTACCATATCAAAATGAGCTATATGTTGATTATATACTATT
AACTCCCTGAAGAAATCTGTTTTGCAGAAACAGTTTTGGTCTTTCTATAGAAATTCCATG
TAGATTCCTCCATGGTTTACGTTTTCATTAGGTTTAGAGGACAATGCAGTTTCTTTCAAA
CCACCTTAACCTAAGTGTTGCCCCTTCCTTCACCTTTATCCTAAAAAAACTGAGAATCCA
TTGATGTGAACTGTGACACTCAATGTGATAAGGTGGGGCTCTTCCAGCCCCATTTTCTTG
GAAAGCCAGGGGATAAGTAAAAGATTTTGCAACATTAAAAATGTAAATGAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAATACCGCAGTCGCATCACCATTACCAGCAGCAAGGAATCTGCACTTGAGCTAAAAT
TATCCCTTTTAAAAATTTCCTGAGCTGTTTAGGGAAGTACCCTCTTCGTTAAAGGCACTG
ACTATAAGAGCACATAAAGAACTGGCTGGAGGGTTGCAAATTTTTATCAATTTAAGATGT
CACTAAAAGACTGAGAGCCTTGGCCACATAAGAGGCAGAGAAGATCCATCGACATCAGTG
AAAGAGTTACAAAGCAAACTAGAAAAAATAGGTTAGCAAGTCAAATGAAGCATATGTCCA
CATTCCAAAGGCATTTTTCTCGAGGAGGAATGTTGATATTCCCCCTTTCCATATTCCTTA
ATACAAAGAAGCTAAAATATATTTAAAGTGCTTAAACTATCAATAAAATAAATACCAAAT
CTGAAAAAAGCCTAGTAAAAAACTTTTGAAAATAATGTAAACCAGTAAGGCTTAAAGATT
TTTTTTCATTTACTAGAGGGGGAATGTACCCTATTAACAGCACAATCAAACAATTAAAAA
GTGGGTAAGGAGGAGTGTTAGAGGCATCAGTGCAGTTTCCCACCAAAAATAGGATCTAAG
CAAAAGAAAACAAAGCCTCTCCAACTTTGTGGACATGCATGTGAATGGCTCTGAGGCATT
AAGACCTGTTGGTCCGAACTTACCATATCAAAATGAGCTATATGTTGATTATATACTATT
AACTCCCTGAAGAAATCTGTTTTGCAGAAACAGTTTTGGTCTTTCTATAGAAATTCCATG
TAGATTCCTCCATGGTTTACGTTTTCATTAGGTTTAGAGGACAATGCAGTTTCTTTCAAA
CCACCTTAACCTAAGTGTTGCCCCTTCCTTCACCTTTATCCTAAAAAAACTGAGAATCCA
TTGATGTGAACTGTGACACTCAATGTGATAAGGTGGGGCTCTTCCAGCCCCATTTTCTTG
GAAAGCCAGGGGATAAGTAAAAGATTTTGCAACATTAAAAATGTAAATGAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               857-976, - strand, RNAz p=0.880215

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               857-976, - strand, RNAz p=0.880215

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               382-976, gnl|bosTau2|chr2 (31790373-31790972)
               

               
               382-976, gnl|Hg17|chr2 (148524605-148524025)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               382-976, gnl|bosTau2|chr2 (31790373-31790972)
               

               
               382-976, gnl|Hg17|chr2 (148524605-148524025)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               elu (0.385356)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	382-976, gnl\|bosTau2\|chr2 (31790373-31790972)
	382-976, gnl\|Hg17\|chr2 (148524605-148524025)

	elu (0.385356)
	eru (0.240096)
	ece (0.229305)
	ebs (0.118301)
	jca (0.11396)
	spc (0.113366)