Ss1.1-Pig4-TMW8041G04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGAATTGACTCAAAAGCCTGGTTTCCCAAAACGAGGCCAAAAGCGGAAGAGTAGTTAT ATGCTGACCTTCCCAGAGGGTGACGGCCGCCGGCGCCGACTACTGTCAAGGGGCCGAGAA AGCCCAGCAGTGCCTCGGTACTCAGAAGAAGGGCTCTCCCCCGCTAAGCGGCGGCGACTC TCCATGCGGAACCACCACAGTGATCTCACATTTTGCGAGATCATCTTGATGGAGATGGAG TCCCATGATGCAGCCTGGCCTTTCCTGGAGCCTGTGAACCCACGATTGGTGAGTGGGTAC CGGCGCATCATCAAAAACCCTATGGATTTTTCCACCATGCGCGAGCGGCTGCTGCGGGGA GGGTACACCAGCTCAGAGGAGTTTGCGGCTGATGCACTCCTAGTCTTTGACAACTGCCAG ACCTTCAACGAGGATGACTCTGAAGTGGGCAAAGCTGGGCATATCATGCGCCGCTTCTTT GAGAGCCGCTGGGAGGAATTTTATCAGGGAAAACAGGCCAAGCTGTGAGGCAAGGGAGGT GGGTGTCACCTTGTGGCATCACCCCCTGCCTGCCCCCAAACAAACCAACCCTGCCATTCT CACCTGCTGATGCTGCCCTGGGTCCAGACTCAAGTCAGAGGTAGAACCCTGGTTTTTGAC CCTACCCTTGGCAGCGCTCTACATCTTATCCCTCCACCCCTTTATCCCTTTCCTCCTCTT GTTCCTCAAATACGAGGGGCAGAGATGAGGTCCTTCTGGACTGAAAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGAATTGACTCAAAAGCCTGGTTTCCCAAAACGAGGCCAAAAGCGGAAGAGTAGTTAT ATGCTGACCTTCCCAGAGGGTGACGGCCGCCGGCGCCGACTACTGTCAAGGGGCCGAGAA AGCCCAGCAGTGCCTCGGTACTCAGAAGAAGGGCTCTCCCCCGCTAAGCGGCGGCGACTC TCCATGCGGAACCACCACAGTGATCTCACATTTTGCGAGATCATCTTGATGGAGATGGAG TCCCATGATGCAGCCTGGCCTTTCCTGGAGCCTGTGAACCCACGATTGGTGAGTGGGTAC CGGCGCATCATCAAAAACCCTATGGATTTTTCCACCATGCGCGAGCGGCTGCTGCGGGGA GGGTACACCAGCTCAGAGGAGTTTGCGGCTGATGCACTCCTAGTCTTTGACAACTGCCAG ACCTTCAACGAGGATGACTCTGAAGTGGGCAAAGCTGGGCATATCATGCGCCGCTTCTTT GAGAGCCGCTGGGAGGAATTTTATCAGGGAAAACAGGCCAAGCTGTGAGGCAAGGGAGGT GGGTGTCACCTTGTGGCATCACCCCCTGCCTGCCCCCAAACAAACCAACCCTGCCATTCT CACCTGCTGATGCTGCCCTGGGTCCAGACTCAAGTCAGAGGTAGAACCCTGGTTTTTGAC CCTACCCTTGGCAGCGCTCTACATCTTATCCCTCCACCCCTTTATCCCTTTCCTCCTCTT GTTCCTCAAATACGAGGGGCAGAGATGAGGTCCTTCTGGACTGAAAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 560-768, - strand, RNAz p=0.998222 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 560-768, - strand, RNAz p=0.998222 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-219, gnl|bosTau2|chr5 (33138789-33139007) | |
| 1-219, gnl|canFam2|chr10 (3820142-3820466) | |
| 1-219, gnl|canFam2|chr10 (3820454-3820285) | |
| 1-219, gnl|echTel1|scaffold_320897 (29994-30274) | |
| 1-219, gnl|echTel1|scaffold_320897 (30262-30093) | |
| 1-219, gnl|fr1|chrUn (184540018-184539716) | |
| 1-219, gnl|hg17|chr12 (55279067-55279391) | |
| 1-219, gnl|Hg17|chr12 (55279400-55279179) | |
| 1-219, gnl|hg17|chrX (117193931-117194104) | |
| 1-219, gnl|loxAfr1|scaffold_14918 (19827-20141) | |
| 1-219, gnl|loxAfr1|scaffold_14918 (20129-19960) | |
| 1-219, gnl|mm7|chr10 (127627819-127627534) | |
| 1-219, gnl|mm7|chr10 (127627546-127627706) | |
| 1-219, gnl|Mm7|chr10 (127627523-127627738) | |
| 1-219, gnl|oryCun1|scaffold_197830 (35741-36067) | |
| 1-219, gnl|oryCun1|scaffold_197830 (36055-35886) | |
| 1-219, gnl|panTro1|chr10_random (22389423-22389746) | |
| 1-219, gnl|panTro1|chrX (121167654-121167827) | |
| 1-219, gnl|rheMac2|chr11 (53682861-53683184) | |
| 1-219, gnl|rheMac2|chrX (116525415-116525580) | |
| 1-219, gnl|rn3|chr7 (1420211-1419907) | |
| 1-219, gnl|rn3|chr7 (1419920-1420094) | |
| 1-219, gnl|tetNig1|chr9 (7524843-7525071) | |
| 1-219, gnl|xenTro1|scaffold_85 (1092294-1091962) | |
| 362-768, gnl|bosTau2|chr5 (33139351-33139753) | |
| 362-768, gnl|Hg17|chr12 (55278835-55278433) | |
| 362-768, gnl|Mm7|chr10 (127628083-127628479) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-219, gnl|bosTau2|chr5 (33138789-33139007) | |
| 1-219, gnl|canFam2|chr10 (3820142-3820466) | |
| 1-219, gnl|canFam2|chr10 (3820454-3820285) | |
| 1-219, gnl|echTel1|scaffold_320897 (29994-30274) | |
| 1-219, gnl|echTel1|scaffold_320897 (30262-30093) | |
| 1-219, gnl|fr1|chrUn (184540018-184539716) | |
| 1-219, gnl|hg17|chr12 (55279067-55279391) | |
| 1-219, gnl|Hg17|chr12 (55279400-55279179) | |
| 1-219, gnl|hg17|chrX (117193931-117194104) | |
| 1-219, gnl|loxAfr1|scaffold_14918 (19827-20141) | |
| 1-219, gnl|loxAfr1|scaffold_14918 (20129-19960) | |
| 1-219, gnl|mm7|chr10 (127627819-127627534) | |
| 1-219, gnl|mm7|chr10 (127627546-127627706) | |
| 1-219, gnl|Mm7|chr10 (127627523-127627738) | |
| 1-219, gnl|oryCun1|scaffold_197830 (35741-36067) | |
| 1-219, gnl|oryCun1|scaffold_197830 (36055-35886) | |
| 1-219, gnl|panTro1|chr10_random (22389423-22389746) | |
| 1-219, gnl|panTro1|chrX (121167654-121167827) | |
| 1-219, gnl|rheMac2|chr11 (53682861-53683184) | |
| 1-219, gnl|rheMac2|chrX (116525415-116525580) | |
| 1-219, gnl|rn3|chr7 (1420211-1419907) | |
| 1-219, gnl|rn3|chr7 (1419920-1420094) | |
| 1-219, gnl|tetNig1|chr9 (7524843-7525071) | |
| 1-219, gnl|xenTro1|scaffold_85 (1092294-1091962) | |
| 362-768, gnl|bosTau2|chr5 (33139351-33139753) | |
| 362-768, gnl|Hg17|chr12 (55278835-55278433) | |
| 362-768, gnl|Mm7|chr10 (127628083-127628479) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| hlv (0.139256) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.139256) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |