Ss1.1-Pig4-TMW8041G08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAGGGCAGGCGTCGCGGGGCTGGCCACTTCCGTACTTCCGCTTTCCGGCCCAGCCAGCG CCCGCGATGACTGCCACTCTCCGCCCCTACCTGAGTGCCGTGCGGGCCACACTGCAGGCT GCCCTCTGCCTGGAGAATTTCTCCTCCCAGGTCGTGGAACGACACAACAAGCCAGAAGTG GAAGTCAGGAGTAGCAAAGAGCTCCTGCTACAACCTGTGACCATCAGCAGGAATGAGAAG GAAAAGGTTCTGATCGAAGGCTCTATCAACTCTGTCCGGGTCAGCATTGCTGTGAAACAG GCTGATGAGATCGAGAAGATTTTATGCCACAAGTTCATGCGCTTCATGATGATGCGAGCA GAGAACTTCTTTATCCTTCGAAGGAAACCAGTGGAGGGGTATGACATCAGCTTTCTGATC ACCAACTTCCACACAGAGCAGATGTATAAACACAAGTTAGTGGACTTTGTGATCCACTTC ATGGAGGAGATCGACAAGGAGATCAGTGAGATGAAGCTATCGGTCAACGCGCGTGCGCGC ATAGTGGCCGAGGAGTTCCTCAAGAATTTCTAAACCATCTGGCTGGATTTTGTGGCCTTC CCCCTCAAGCTCCCTGTGTCTGCGAAGGCGTCCTGGAGTTACTCCCCAGAGCGGCGGTGG CAGCAGCAGTGGAGGGGAGCTGGGTTGGGGTGGGCGTTAGATGCGGGAGGGGGGTGGTAT GCTTGCTAGCTGGGCAACAAAGCAGTGGACCTGCCCCAAGGCCATGTGTGCCTGGTCAGG CTGGCTTCTGATGTTCTGTCCCCTGGGCTGGGACAGGTTTTTTTTTTTTTTTTTAAGTCT TGAAACTTAAACTCTGTGCTTGTAGAGACTGTAACCTTTTGTCTTTTTTTTTTTTTTTTT TTTTAAACAAACAACCTCCACCTCCAGTGGCTGTGACTGGTCCCAGTGATTGTACCTTAT TTGGTCGCTGTGGTCTGGGCGGGCCTGGAGCCAGAAGGCGACTACTGTTCCTCGCCAGAG CCACCCCAGGTGGGGAGGGAGGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAGGGCAGGCGTCGCGGGGCTGGCCACTTCCGTACTTCCGCTTTCCGGCCCAGCCAGCG CCCGCGATGACTGCCACTCTCCGCCCCTACCTGAGTGCCGTGCGGGCCACACTGCAGGCT GCCCTCTGCCTGGAGAATTTCTCCTCCCAGGTCGTGGAACGACACAACAAGCCAGAAGTG GAAGTCAGGAGTAGCAAAGAGCTCCTGCTACAACCTGTGACCATCAGCAGGAATGAGAAG GAAAAGGTTCTGATCGAAGGCTCTATCAACTCTGTCCGGGTCAGCATTGCTGTGAAACAG GCTGATGAGATCGAGAAGATTTTATGCCACAAGTTCATGCGCTTCATGATGATGCGAGCA GAGAACTTCTTTATCCTTCGAAGGAAACCAGTGGAGGGGTATGACATCAGCTTTCTGATC ACCAACTTCCACACAGAGCAGATGTATAAACACAAGTTAGTGGACTTTGTGATCCACTTC ATGGAGGAGATCGACAAGGAGATCAGTGAGATGAAGCTATCGGTCAACGCGCGTGCGCGC ATAGTGGCCGAGGAGTTCCTCAAGAATTTCTAAACCATCTGGCTGGATTTTGTGGCCTTC CCCCTCAAGCTCCCTGTGTCTGCGAAGGCGTCCTGGAGTTACTCCCCAGAGCGGCGGTGG CAGCAGCAGTGGAGGGGAGCTGGGTTGGGGTGGGCGTTAGATGCGGGAGGGGGGTGGTAT GCTTGCTAGCTGGGCAACAAAGCAGTGGACCTGCCCCAAGGCCATGTGTGCCTGGTCAGG CTGGCTTCTGATGTTCTGTCCCCTGGGCTGGGACAGGTTTTTTTTTTTTTTTTTAAGTCT TGAAACTTAAACTCTGTGCTTGTAGAGACTGTAACCTTTTGTCTTTTTTTTTTTTTTTTT TTTTAAACAAACAACCTCCACCTCCAGTGGCTGTGACTGGTCCCAGTGATTGTACCTTAT TTGGTCGCTGTGGTCTGGGCGGGCCTGGAGCCAGAAGGCGACTACTGTTCCTCGCCAGAG CCACCCCAGGTGGGGAGGGAGGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 434-835, - strand, RNAz p=0.829869 | |
| 724-1043, - strand, RNAz p=0.979598 | |
| 745-860, - strand, RNAz p=0.952467 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 434-835, - strand, RNAz p=0.829869 | |
| 724-1043, - strand, RNAz p=0.979598 | |
| 745-860, - strand, RNAz p=0.952467 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 3-1044, gnl|bosTau2|chr2 (2009877-2008828) | |
| 3-1044, gnl|Hg17|chr3 (9814342-9823355) | |
| 3-1044, gnl|Mm7|chr6 (113539070-113550181) | |
| 41-300, gnl|bosTau2|chr17 (23416340-23416085) | |
| 41-300, gnl|Hg17|chr3 (9814342-9816980) | |
| 41-300, gnl|Mm7|chr6 (113541647-113543002) | |
| 395-567, gnl|bosTau2|chr22 (11946351-11946523) | |
| 395-567, gnl|canFam2|chr20 (11448147-11447925) | |
| 395-567, gnl|danRer3|chr14 (5698637-5698439) | |
| 395-567, gnl|dasNov1|scaffold_245268 (640-420) | |
| 395-567, gnl|echTel1|scaffold_311188 (81206-81424) | |
| 395-567, gnl|fr1|chrUn (57759198-57759400) | |
| 395-567, gnl|galGal2|chr12 (11493403-11493623) | |
| 395-567, gnl|hg17|chr3 (9820513-9820733) | |
| 395-567, gnl|Hg17|chr3 (9820525-9820697) | |
| 395-567, gnl|loxAfr1|scaffold_12207 (39277-39500) | |
| 395-567, gnl|mm7|chr6 (113546408-113546620) | |
| 395-567, gnl|Mm7|chr6 (113546416-113546588) | |
| 395-567, gnl|monDom2|scaffold_5 (36597214-36597435) | |
| 395-567, gnl|oryCun1|scaffold_209265 (78928-78687) | |
| 395-567, gnl|panTro1|chr2 (10201565-10201785) | |
| 395-567, gnl|rheMac2|chr2 (51189444-51189223) | |
| 395-567, gnl|rn3|chr4 (149511979-149512191) | |
| 395-567, gnl|tetNig1|chr11 (1803082-1802879) | |
| 395-567, gnl|xenTro1|scaffold_1005 (353647-353861) | |
| 568-1043, gnl|bosTau2|chr22 (11948854-11949340) | |
| 568-1043, gnl|Hg17|chr3 (9822894-9823354) | |
| 568-1043, gnl|Mm7|chr6 (113549699-113550180) | |
| 724-865, gnl|bosTau2|chr11 (53603215-53603078) | |
| 724-865, gnl|canFam2|chr17 (22183107-22183314) | |
| 724-865, gnl|dasNov1|scaffold_99576 (4638-4803) | |
| 724-865, gnl|echTel1|scaffold_82877 (46-249) | |
| 724-865, gnl|hg17|chr2 (25014119-25014303) | |
| 724-865, gnl|Mm7|chr6 (113549858-113550001) | |
| 724-865, gnl|panTro1|chr12 (25894280-25894464) | |
| 724-865, gnl|rheMac2|chr13 (24793283-24793464) | |
| 724-865, gnl|rn3|chr6 (27151609-27151412) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-1044, gnl|bosTau2|chr2 (2009877-2008828) | |
| 3-1044, gnl|Hg17|chr3 (9814342-9823355) | |
| 3-1044, gnl|Mm7|chr6 (113539070-113550181) | |
| 41-300, gnl|bosTau2|chr17 (23416340-23416085) | |
| 41-300, gnl|Hg17|chr3 (9814342-9816980) | |
| 41-300, gnl|Mm7|chr6 (113541647-113543002) | |
| 395-567, gnl|bosTau2|chr22 (11946351-11946523) | |
| 395-567, gnl|canFam2|chr20 (11448147-11447925) | |
| 395-567, gnl|danRer3|chr14 (5698637-5698439) | |
| 395-567, gnl|dasNov1|scaffold_245268 (640-420) | |
| 395-567, gnl|echTel1|scaffold_311188 (81206-81424) | |
| 395-567, gnl|fr1|chrUn (57759198-57759400) | |
| 395-567, gnl|galGal2|chr12 (11493403-11493623) | |
| 395-567, gnl|hg17|chr3 (9820513-9820733) | |
| 395-567, gnl|Hg17|chr3 (9820525-9820697) | |
| 395-567, gnl|loxAfr1|scaffold_12207 (39277-39500) | |
| 395-567, gnl|mm7|chr6 (113546408-113546620) | |
| 395-567, gnl|Mm7|chr6 (113546416-113546588) | |
| 395-567, gnl|monDom2|scaffold_5 (36597214-36597435) | |
| 395-567, gnl|oryCun1|scaffold_209265 (78928-78687) | |
| 395-567, gnl|panTro1|chr2 (10201565-10201785) | |
| 395-567, gnl|rheMac2|chr2 (51189444-51189223) | |
| 395-567, gnl|rn3|chr4 (149511979-149512191) | |
| 395-567, gnl|tetNig1|chr11 (1803082-1802879) | |
| 395-567, gnl|xenTro1|scaffold_1005 (353647-353861) | |
| 568-1043, gnl|bosTau2|chr22 (11948854-11949340) | |
| 568-1043, gnl|Hg17|chr3 (9822894-9823354) | |
| 568-1043, gnl|Mm7|chr6 (113549699-113550180) | |
| 724-865, gnl|bosTau2|chr11 (53603215-53603078) | |
| 724-865, gnl|canFam2|chr17 (22183107-22183314) | |
| 724-865, gnl|dasNov1|scaffold_99576 (4638-4803) | |
| 724-865, gnl|echTel1|scaffold_82877 (46-249) | |
| 724-865, gnl|hg17|chr2 (25014119-25014303) | |
| 724-865, gnl|Mm7|chr6 (113549858-113550001) | |
| 724-865, gnl|panTro1|chr12 (25894280-25894464) | |
| 724-865, gnl|rheMac2|chr13 (24793283-24793464) | |
| 724-865, gnl|rn3|chr6 (27151609-27151412) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| clu (1.07681) | |
| ese (0.632511) | |
| nlu (0.575043) | |
| nep (0.551775) | |
| nco (0.485201) | |
| ece (0.45861) | |
| cov (0.396458) | |
| ton (0.351) | |
| cty (0.31224) | |
| eep (0.245128) | |
| ebs (0.236602) | |
| med (0.232504) | |
| fli (0.202881) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (1.07681) | |
| ese (0.632511) | |
| nlu (0.575043) | |
| nep (0.551775) | |
| nco (0.485201) | |
| ece (0.45861) | |
| cov (0.396458) | |
| ton (0.351) | |
| cty (0.31224) | |
| eep (0.245128) | |
| ebs (0.236602) | |
| med (0.232504) | |
| fli (0.202881) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |