Non-Coding RNA Search

Ss1.1-Pig4-TMW8041G11.5

Sequence:


               
               TCAGGCGCCGCAGCACCGGGGAGGTGGTTCCCACTTTAAAGAAGTGAAGTTTTTCGCCCC
CTCCCCCTCCCCGCCTGCCTCTTGCAGCCTCCCGCGTCCCGCGGAGCCGGCGGATGGAGC
TACGCTGCGGCGGCGTAGGGAGCCAGGCTGGGGGGCGCAGGATGGATGGGGACAGCCGAG
ATGGCGGCGGCGGCTGCAAGGACGCCGGGTCGGAGGACTACGAGAACCTGCCGACCAGCG
CCTCCTTATCCACCCACATGACAGCCGGAGCGATGGCCGGGATCCTGGAGCACTCGGTCA
TGTACCCGGTAGACTCAGTGAAGACACGAATGCAGAGTTTGAATCCAGATCCCAAAGCCC
ATTACACAAGTGTCTACGGAGCCCTCAAGAAAATCATACGGACTGAAGGCTTCTGGAGAC
CCTTGCGAGGCCTCAATGTGATGATAATGGGTGCGGGGCCGGCCCACGCCATGTATTTTG
CCTGCTATGAAAACATGAAAAGGACTTTAAATGCCGTTTTCCACCATCAAGGGAACAGCC
ACCTAGCCAACGGTATTTGCAAGCGTTTGTCTGGAGTTAGAAAGGTCTCTCCTTCAACAG
ACCCTTCCCCGGGGCTCTCGTGACCCAGCAGCCTGACGCCTCATCTCCGCCGTGCTTGCT
TATGAATCAAGGACTCTAGAGTCGTGTGTGTGCGCACACACCCAAACACACGCACACGCA
CACACGCGCACGCGCTTTTTTCATTCCCCCCCTTCGCTTTCTGAAGCCGGGGGAAAATCG
GTGACAGAGGTGTTTCATTGTTCAATGGGTTTTGCCGTTTTGGTTTTTTTTTTTTTTTTT
AAACCCTCAAAAGCAATTCATGATCAGATCTAGGGAAAACAAACAAACAAAACCCTGAAT
AGAAACAAAACTTTTGAATGCTGGATTCCAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGGCGCCGCAGCACCGGGGAGGTGGTTCCCACTTTAAAGAAGTGAAGTTTTTCGCCCC
CTCCCCCTCCCCGCCTGCCTCTTGCAGCCTCCCGCGTCCCGCGGAGCCGGCGGATGGAGC
TACGCTGCGGCGGCGTAGGGAGCCAGGCTGGGGGGCGCAGGATGGATGGGGACAGCCGAG
ATGGCGGCGGCGGCTGCAAGGACGCCGGGTCGGAGGACTACGAGAACCTGCCGACCAGCG
CCTCCTTATCCACCCACATGACAGCCGGAGCGATGGCCGGGATCCTGGAGCACTCGGTCA
TGTACCCGGTAGACTCAGTGAAGACACGAATGCAGAGTTTGAATCCAGATCCCAAAGCCC
ATTACACAAGTGTCTACGGAGCCCTCAAGAAAATCATACGGACTGAAGGCTTCTGGAGAC
CCTTGCGAGGCCTCAATGTGATGATAATGGGTGCGGGGCCGGCCCACGCCATGTATTTTG
CCTGCTATGAAAACATGAAAAGGACTTTAAATGCCGTTTTCCACCATCAAGGGAACAGCC
ACCTAGCCAACGGTATTTGCAAGCGTTTGTCTGGAGTTAGAAAGGTCTCTCCTTCAACAG
ACCCTTCCCCGGGGCTCTCGTGACCCAGCAGCCTGACGCCTCATCTCCGCCGTGCTTGCT
TATGAATCAAGGACTCTAGAGTCGTGTGTGTGCGCACACACCCAAACACACGCACACGCA
CACACGCGCACGCGCTTTTTTCATTCCCCCCCTTCGCTTTCTGAAGCCGGGGGAAAATCG
GTGACAGAGGTGTTTCATTGTTCAATGGGTTTTGCCGTTTTGGTTTTTTTTTTTTTTTTT
AAACCCTCAAAAGCAATTCATGATCAGATCTAGGGAAAACAAACAAACAAAACCCTGAAT
AGAAACAAAACTTTTGAATGCTGGATTCCAGAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q969S1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q969S1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               362-481, + strand, RNAz p=0.55287

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               362-481, + strand, RNAz p=0.55287

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC076399, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC076399, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               322-557, gnl|bosTau2|chr26 (11999850-11999615)
               

               
               322-557, gnl|Hg17|chr10 (101363673-101363438)
               

               
               322-557, gnl|Mm7|chr19 (43561018-43560783)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               322-557, gnl|bosTau2|chr26 (11999850-11999615)
               

               
               322-557, gnl|Hg17|chr10 (101363673-101363438)
               

               
               322-557, gnl|Mm7|chr19 (43561018-43560783)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nco (0.161734)
               

               
               eli (0.151814)
               

               
               nca (0.136874)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               nca (0.136874)

	322-557, gnl\|bosTau2\|chr26 (11999850-11999615)
	322-557, gnl\|Hg17\|chr10 (101363673-101363438)
	322-557, gnl\|Mm7\|chr19 (43561018-43560783)