Ss1.1-Pig4-TMW8041G19.5
|
TTTTTTTTTTTTTTTTTAACTCGAACTTTTCATAACTCAGGGGATTCCCTGAAAAATAAT
CTGCAGGTGGAATACTTCCCGGACAAAATTCTTTTCTCCCCTTCCAAATTCAGTTTCTCA
TCACTAAAGAACAAAGATAAACCAGCCTCAATCCCGGCTGCTGCATTTGGGTGAAGAATT
CTTCCCATGCCCACAATCACTCCCCCACCATGCCACACTTGGGGGGTTTGTATCTCATGC
TCTTCTCCAGAGATTACACAAATGTAGCTTCTTCAAGGGAGGTGGGAAGGAAGGAGGAAG
GGAGGACCCAACCTATAAGAACAGTGTACTGCTAGTCACTTATATCACCTTACTCCAAAA
GTGCTTCAGTGGGGTTATCCTGGTGAATCTGTTGGACATAGGTCTTAGTTAACGTTGAGA
TGCTGAAAATGTACCCCAAGTGCAGACAGGTTCTGAAAAATTCTGTTTGGTGTGAATCAT
GTCTTATTGACCTAACTCTAAATTCAACTCACTTATAATTTAGTTTCAGTTTAGTTTCAA
ACTTTAATACTGTACCTCCCAGGCTCCTTACCTTAGTCCTCTCCCCTTTCATCTCCCAAT
ACGCTCTATAGCTGGTAGGAGAGGGGAAGGCAAAGTCTTTCAGTTTTCTTTGACTCAGCC
ATTTTGATTTCAATTAGTTACTGGGCATAACTTATTGCTTTTTACAAAAGGAAAAAAAAA
TCATCTATGTATGTTTCATGCTAGCAATTCTTTAAGAGCTAATGAGAGATGTGGCCACAC
CGAGTTTTATTTTAGGCTTTCTACCTTCTTTTCCTCCTACCTTCCCCTTCCCTCACATGC
CACATCCAGTGAGAAGACCTGCCCCTCAGTCTTGTAAATGTATCTGAGAGGTAGGAGCAG
AGCCACTATCTCCAGTGAAACTGAAATGGTAGACCTGTAATTGTGGGAAAACTAAACTCT
CTTGTTACAGCCCTGCCACCCCTTGCTGTGTGTATATATATAATACTTTGTCCTTCATAT
GTGAAAGATCCAGTGTTGGAATTCTTTGGTGTAAATAAACGTTTGGTTTTATTTATCAAG
AAAAAAAAAAAATTCCCTGTGTAAAGGTCTCGCTGGGTGGGTGTCTCACGTTCACATCTG
AGGGGCCTGCAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTTTTTTTTTTTTTTTAACTCGAACTTTTCATAACTCAGGGGATTCCCTGAAAAATAAT
CTGCAGGTGGAATACTTCCCGGACAAAATTCTTTTCTCCCCTTCCAAATTCAGTTTCTCA
TCACTAAAGAACAAAGATAAACCAGCCTCAATCCCGGCTGCTGCATTTGGGTGAAGAATT
CTTCCCATGCCCACAATCACTCCCCCACCATGCCACACTTGGGGGGTTTGTATCTCATGC
TCTTCTCCAGAGATTACACAAATGTAGCTTCTTCAAGGGAGGTGGGAAGGAAGGAGGAAG
GGAGGACCCAACCTATAAGAACAGTGTACTGCTAGTCACTTATATCACCTTACTCCAAAA
GTGCTTCAGTGGGGTTATCCTGGTGAATCTGTTGGACATAGGTCTTAGTTAACGTTGAGA
TGCTGAAAATGTACCCCAAGTGCAGACAGGTTCTGAAAAATTCTGTTTGGTGTGAATCAT
GTCTTATTGACCTAACTCTAAATTCAACTCACTTATAATTTAGTTTCAGTTTAGTTTCAA
ACTTTAATACTGTACCTCCCAGGCTCCTTACCTTAGTCCTCTCCCCTTTCATCTCCCAAT
ACGCTCTATAGCTGGTAGGAGAGGGGAAGGCAAAGTCTTTCAGTTTTCTTTGACTCAGCC
ATTTTGATTTCAATTAGTTACTGGGCATAACTTATTGCTTTTTACAAAAGGAAAAAAAAA
TCATCTATGTATGTTTCATGCTAGCAATTCTTTAAGAGCTAATGAGAGATGTGGCCACAC
CGAGTTTTATTTTAGGCTTTCTACCTTCTTTTCCTCCTACCTTCCCCTTCCCTCACATGC
CACATCCAGTGAGAAGACCTGCCCCTCAGTCTTGTAAATGTATCTGAGAGGTAGGAGCAG
AGCCACTATCTCCAGTGAAACTGAAATGGTAGACCTGTAATTGTGGGAAAACTAAACTCT
CTTGTTACAGCCCTGCCACCCCTTGCTGTGTGTATATATATAATACTTTGTCCTTCATAT
GTGAAAGATCCAGTGTTGGAATTCTTTGGTGTAAATAAACGTTTGGTTTTATTTATCAAG
AAAAAAAAAAAATTCCCTGTGTAAAGGTCTCGCTGGGTGGGTGTCTCACGTTCACATCTG
AGGGGCCTGCAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-105, gnl|bosTau2|chr13 (41856712-41856610) |
|
3-105, gnl|canFam2|chr24 (23358536-23358465) |
|
3-105, gnl|dasNov1|scaffold_25044 (4959-5030) |
|
3-105, gnl|echTel1|scaffold_247412 (5446-5518) |
|
3-105, gnl|hg17|chr20 (412325-412398) |
|
3-105, gnl|Hg17|chr20 (412426-412324) |
|
3-105, gnl|loxAfr1|scaffold_54458 (5021-5092) |
|
3-105, gnl|mm7|chr2 (152020245-152020173) |
|
3-105, gnl|Mm7|chr2 (152020140-152020245) |
|
3-105, gnl|monDom2|scaffold_38 (2565814-2565886) |
|
3-105, gnl|oryCun1|scaffold_197859 (9298-9370) |
|
3-105, gnl|panTro1|chr21 (492576-492649) |
|
3-105, gnl|rheMac2|chr10 (33736520-33736592) |
|
3-105, gnl|rn3|chr3 (142515030-142514958) |
| |
|
442-1152, gnl|bosTau2|chr13 (41856482-41855774) |
|
442-1152, gnl|Hg17|chr20 (411970-411265) |
|
442-1152, gnl|Mm7|chr2 (152020577-152021268) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-105, gnl|bosTau2|chr13 (41856712-41856610) |
|
3-105, gnl|canFam2|chr24 (23358536-23358465) |
|
3-105, gnl|dasNov1|scaffold_25044 (4959-5030) |
|
3-105, gnl|echTel1|scaffold_247412 (5446-5518) |
|
3-105, gnl|hg17|chr20 (412325-412398) |
|
3-105, gnl|Hg17|chr20 (412426-412324) |
|
3-105, gnl|loxAfr1|scaffold_54458 (5021-5092) |
|
3-105, gnl|mm7|chr2 (152020245-152020173) |
|
3-105, gnl|Mm7|chr2 (152020140-152020245) |
|
3-105, gnl|monDom2|scaffold_38 (2565814-2565886) |
|
3-105, gnl|oryCun1|scaffold_197859 (9298-9370) |
|
3-105, gnl|panTro1|chr21 (492576-492649) |
|
3-105, gnl|rheMac2|chr10 (33736520-33736592) |
|
3-105, gnl|rn3|chr3 (142515030-142514958) |
| |
|
442-1152, gnl|bosTau2|chr13 (41856482-41855774) |
|
442-1152, gnl|Hg17|chr20 (411970-411265) |
|
442-1152, gnl|Mm7|chr2 (152020577-152021268) |
|
ctl (1.53069) |
|
fce (0.543183) |
|
hea (0.408998) |
|
sto (0.359648) |
|
gul (0.355177) |
|
fhi (0.339155) |
|
nco (0.323468) |
|
cte (0.29274) |
|
bla (0.248694) |
|
cbe (0.239234) |
|
nms (0.213858) |
|
fty (0.17584) |
|
sin (0.174948) |
|
rec (0.17307) |
|
csp (0.161186) |
|
fat (0.147427) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
ssp (0.13552) |
|
ret (0.128733) |
|
clu (0.119646) |
|
med (0.116252) |
|
cbl (0.114797) |
|
spc (0.113366) |
|
cty (0.10408) |
|
ldo (0.0970026) |
|
ctl (1.53069) |
|
fce (0.543183) |
|
hea (0.408998) |
|
sto (0.359648) |
|
gul (0.355177) |
|
fhi (0.339155) |
|
nco (0.323468) |
|
cte (0.29274) |
|
bla (0.248694) |
|
cbe (0.239234) |
|
nms (0.213858) |
|
fty (0.17584) |
|
sin (0.174948) |
|
rec (0.17307) |
|
csp (0.161186) |
|
fat (0.147427) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
ssp (0.13552) |
|
ret (0.128733) |
|
clu (0.119646) |
|
med (0.116252) |
|
cbl (0.114797) |
|
spc (0.113366) |
|
cty (0.10408) |
|
ldo (0.0970026) |
