Non-Coding RNA Search

Ss1.1-Pig4-TMW8041H02.3

Sequence:


               
               GAGGTGGATTAGGGGAGGGGATTTGCACAAGCAAACAAACTAGTGTCGAGCCGAGCGTGT
GGGGATGGATGCATTTACTCCTTAGATGCAAAGCTGACCAGGGCAGCCTCCCTGGGTGCA
GCCTTACCCAAGGTGGTTGACACCCAGCATCTGTCTGATGCCTATGAGATGCTGTTCCAG
GCAGCTTGTTAAATTCGGAGAGTCCCCCAGTCTAGGCAGGCAATCACTCAGGACCCCAGA
ATAAAACTCAGAATGGGCCCTCCTGCTGGTGTCCACAGCATGTGCAGAGACATTCAATAG
CCTTTGCCCCCGCCCCGCCACAGAACATCTGGTGCACATGTTCTAGAGAATGCGCTGAAA
TCCTAGTGCTTATTCCCAGGGGCATAGATTCACAGCACATTCTGTTCCACTGTAAATTCT
TTATCTTGCTTTTGAGAGCCAAACCTTATATCCAACGTGGGAAAGGTACCTACCCCAACT
TAAAGTGCCTAATGTAACCATGGAGCATGGCTTACCTTCAGGGACAATCACCCAGGAAAC
TAATAACTCACCACTTGTTGGACAGAGGTAAGCGCAGCAGCTTTCTAGGTGGAGCAGGCG
CCTCCCCTAAGCAAATGGTTAGTCATTAGCAGTGATATCAGGACACCTTGACCTTAACTT
TTTTACATTATTACTTTTTAATTTCCTTTGGGACTGGGGATTCTGGTCAAAATAATTCCT
TAAGAGGCTGCTGTCTTGTTTGGGTTTTAAGTTCATGAGATTTGGAGCAGCAAAGAGATA
GATGAAATGTTTTACACCATGTAATGTCTGATTGTGATTAAAATATAACAACACCTGCAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGTGGATTAGGGGAGGGGATTTGCACAAGCAAACAAACTAGTGTCGAGCCGAGCGTGT
GGGGATGGATGCATTTACTCCTTAGATGCAAAGCTGACCAGGGCAGCCTCCCTGGGTGCA
GCCTTACCCAAGGTGGTTGACACCCAGCATCTGTCTGATGCCTATGAGATGCTGTTCCAG
GCAGCTTGTTAAATTCGGAGAGTCCCCCAGTCTAGGCAGGCAATCACTCAGGACCCCAGA
ATAAAACTCAGAATGGGCCCTCCTGCTGGTGTCCACAGCATGTGCAGAGACATTCAATAG
CCTTTGCCCCCGCCCCGCCACAGAACATCTGGTGCACATGTTCTAGAGAATGCGCTGAAA
TCCTAGTGCTTATTCCCAGGGGCATAGATTCACAGCACATTCTGTTCCACTGTAAATTCT
TTATCTTGCTTTTGAGAGCCAAACCTTATATCCAACGTGGGAAAGGTACCTACCCCAACT
TAAAGTGCCTAATGTAACCATGGAGCATGGCTTACCTTCAGGGACAATCACCCAGGAAAC
TAATAACTCACCACTTGTTGGACAGAGGTAAGCGCAGCAGCTTTCTAGGTGGAGCAGGCG
CCTCCCCTAAGCAAATGGTTAGTCATTAGCAGTGATATCAGGACACCTTGACCTTAACTT
TTTTACATTATTACTTTTTAATTTCCTTTGGGACTGGGGATTCTGGTCAAAATAATTCCT
TAAGAGGCTGCTGTCTTGTTTGGGTTTTAAGTTCATGAGATTTGGAGCAGCAAAGAGATA
GATGAAATGTTTTACACCATGTAATGTCTGATTGTGATTAAAATATAACAACACCTGCAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               308-425, - strand, RNAz p=0.749103

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               308-425, - strand, RNAz p=0.749103

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-833, gnl|bosTau2|chr6 (28798702-28797881)
               

               
               1-833, gnl|Hg17|chr4 (37415177-37416014)
               

               
               1-833, gnl|Mm7|chr5 (63252751-63253531)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-833, gnl|bosTau2|chr6 (28798702-28797881)
               

               
               1-833, gnl|Hg17|chr4 (37415177-37416014)
               

               
               1-833, gnl|Mm7|chr5 (63252751-63253531)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               mga (0.32041)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               cli (0.152812)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               bla (0.124347)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.32041)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               cli (0.152812)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               bla (0.124347)

	1-833, gnl\|bosTau2\|chr6 (28798702-28797881)
	1-833, gnl\|Hg17\|chr4 (37415177-37416014)
	1-833, gnl\|Mm7\|chr5 (63252751-63253531)

	mga (0.32041)
	mgp (0.230681)
	sag (0.182715)
	sto (0.179824)
	cli (0.152812)
	spl (0.143184)
	cst (0.140036)
	lyg (0.133103)
	kid (0.129735)
	bla (0.124347)