Non-Coding RNA Search

Ss1.1-Pig4-TMW8041H08.3

Sequence:


               
               CCCTGGTGCCCGACACTCCCCCAGACACCCCCCCTGCCATGAAGAATGTTGCTAGCCCTA
AGCAGCTCCCGCTGGAACCAGAGAGCCCCCCCGGGCTGGTTGGGCCTAAACCAGCCTCCC
AGCAAGAAGAGCCCCCTCTCTCTTATGTGAAGAGCAGGGGACCGACCCCTCCAGCCACAG
GCCCACGGGATGCCAGGCCTCCTCGAAGGAGCAGCCAGCCATCGCCAACGGCAGTGCCAG
CCTCCGACAGCACCCCCACCAAGCAAGATGTAAAGAAGGCAGGGGAGAGACACAAACTGG
CAAAGGAGCGGCGGGAAGAACGGGCCAAGTACCTGGCGGCCAAGAAGGCGGTGTGGCTGG
AGAAGGAGGAAAAGGCCAAGGCGCTGCGGGAGAAGCAGCTCCAGGAGCGCCGGCGGCGTC
TGGAGGAGCAGCGGCTCAAAGCCGAGCAACGCCGGGCAGCCCTGGAGGAGCGGCAGCGGC
AGAAGCTGGAGAAAAACAAGGAGCGCTATGAAGCAGCCATCCAGCGGTCAGTGAAAAAGA
CGTGGGCTGAAATCCGGCAGCAGCGCTGGTCCTGGGCAGGGGCCCTGCACCACAGCTCCC
CAGGACGTAAGACCAATCGCAGCCTGCAGCTGAGCGCGGCAGTAAACCTGCCCAAACACG
TGGACTCTATAATCAACAAGCGGCTCTCAAAGTCCTCTGCCACGCTCTGGAACTCCCCCA
GTAGAAATCGCAGCCTGCAGCTGAGCGCATGGGAGAGCAGCATCGTGGACCGTCTGATGA
CGCCCACCCTCTCCTTCCTGGCACGGAGTCGCAGTGCAGTCACACTGCCCCGAAACGGCC
GGGACCAGGCCGTGCCCGTGTGCCCACGCTCAGCCTCCGCCAGCCCCCTGACACCTCTGT
GCAGCGCCCCCCGAAGCGGGCACCGCTGCGTCCCTGCGGGGGAGCGAGGGGAGCGCCGCA
AGGCCAGCGCCGGGGGCAGTCCCGCCCCAGGCCGCCTGAGGCCAGAGACCTCACTGGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGGTGCCCGACACTCCCCCAGACACCCCCCCTGCCATGAAGAATGTTGCTAGCCCTA
AGCAGCTCCCGCTGGAACCAGAGAGCCCCCCCGGGCTGGTTGGGCCTAAACCAGCCTCCC
AGCAAGAAGAGCCCCCTCTCTCTTATGTGAAGAGCAGGGGACCGACCCCTCCAGCCACAG
GCCCACGGGATGCCAGGCCTCCTCGAAGGAGCAGCCAGCCATCGCCAACGGCAGTGCCAG
CCTCCGACAGCACCCCCACCAAGCAAGATGTAAAGAAGGCAGGGGAGAGACACAAACTGG
CAAAGGAGCGGCGGGAAGAACGGGCCAAGTACCTGGCGGCCAAGAAGGCGGTGTGGCTGG
AGAAGGAGGAAAAGGCCAAGGCGCTGCGGGAGAAGCAGCTCCAGGAGCGCCGGCGGCGTC
TGGAGGAGCAGCGGCTCAAAGCCGAGCAACGCCGGGCAGCCCTGGAGGAGCGGCAGCGGC
AGAAGCTGGAGAAAAACAAGGAGCGCTATGAAGCAGCCATCCAGCGGTCAGTGAAAAAGA
CGTGGGCTGAAATCCGGCAGCAGCGCTGGTCCTGGGCAGGGGCCCTGCACCACAGCTCCC
CAGGACGTAAGACCAATCGCAGCCTGCAGCTGAGCGCGGCAGTAAACCTGCCCAAACACG
TGGACTCTATAATCAACAAGCGGCTCTCAAAGTCCTCTGCCACGCTCTGGAACTCCCCCA
GTAGAAATCGCAGCCTGCAGCTGAGCGCATGGGAGAGCAGCATCGTGGACCGTCTGATGA
CGCCCACCCTCTCCTTCCTGGCACGGAGTCGCAGTGCAGTCACACTGCCCCGAAACGGCC
GGGACCAGGCCGTGCCCGTGTGCCCACGCTCAGCCTCCGCCAGCCCCCTGACACCTCTGT
GCAGCGCCCCCCGAAGCGGGCACCGCTGCGTCCCTGCGGGGGAGCGAGGGGAGCGCCGCA
AGGCCAGCGCCGGGGGCAGTCCCGCCCCAGGCCGCCTGAGGCCAGAGACCTCACTGGCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47188000|emb|CAG13380.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47188000|emb|CAG13380.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-239, - strand, RNAz p=0.752079

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, - strand, RNAz p=0.752079

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-267, gnl|bosTau2|chr3 (76724941-76724675)
               

               
               1-267, gnl|Hg17|chr1 (36305743-36306009)
               

               
               1-267, gnl|Mm7|chr4 (125686930-125686664)
               


               
               336-505, gnl|bosTau2|chr3 (76723842-76723673)
               

               
               336-505, gnl|Hg17|chr1 (36307157-36307326)
               

               
               336-505, gnl|Mm7|chr4 (125685525-125685356)
               


               
               851-1017, gnl|bosTau2|chr3 (76720185-76720022)
               

               
               851-1017, gnl|Hg17|chr1 (36311113-36311276)
               

               
               851-1017, gnl|Mm7|chr4 (125681705-125681542)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-267, gnl|bosTau2|chr3 (76724941-76724675)
               

               
               1-267, gnl|Hg17|chr1 (36305743-36306009)
               

               
               1-267, gnl|Mm7|chr4 (125686930-125686664)
               


               
               336-505, gnl|bosTau2|chr3 (76723842-76723673)
               

               
               336-505, gnl|Hg17|chr1 (36307157-36307326)
               

               
               336-505, gnl|Mm7|chr4 (125685525-125685356)
               


               
               851-1017, gnl|bosTau2|chr3 (76720185-76720022)
               

               
               851-1017, gnl|Hg17|chr1 (36311113-36311276)
               

               
               851-1017, gnl|Mm7|chr4 (125681705-125681542)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hlv (0.139256)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               ebs (0.118301)

	1-267, gnl\|bosTau2\|chr3 (76724941-76724675)
	1-267, gnl\|Hg17\|chr1 (36305743-36306009)
	1-267, gnl\|Mm7\|chr4 (125686930-125686664)

	336-505, gnl\|bosTau2\|chr3 (76723842-76723673)
	336-505, gnl\|Hg17\|chr1 (36307157-36307326)
	336-505, gnl\|Mm7\|chr4 (125685525-125685356)

	851-1017, gnl\|bosTau2\|chr3 (76720185-76720022)
	851-1017, gnl\|Hg17\|chr1 (36311113-36311276)
	851-1017, gnl\|Mm7\|chr4 (125681705-125681542)