Ss1.1-Pig4-TMW8041H14.3
|
CTTGTATATGAAGCCATTATAATGGTTTTAGAGTCAACTGGAGAAAGTACCTTTAAAATG
ATTTTGGATTTATTAAAATCTCTTTGGAAATCTTCTACCATTACTCTAGACCAAATGAAA
AGAGGTTATGAGAGAATTTACAATGAAATTCCAGACATTAATCTAGACGTCCCACATTCA
TACTCCATGCTTGAGCGATTTGTAGAAGAATGTTTTCAGGCCGGAATAATTTCCAAACAG
CTCAGAGATCTTTGTCCTTCAAGGGGCAGAAAACGTTTTGTAAGTGAAGGAGATGGAGGT
CGTCTTAAACCAGAGAGCTACTGAATATAAAAACTCTTGCAAGTCTTAGATGTTATAAAA
AATACATATATCTGAATTGTAAGAGTTGTTAGCACAGTTTTTTTTTTTTTTTTTTTTTTT
TCAAAGCACTTGTTTTGGGTTTAAGGCATTTCCGAAATTTTGTAAACTTACATTTAAGGG
GAATTTTTAAAGGAAGTGTTTTTTTTTTCTTTCTTTTTCTTTTTTCCGAGGGTGTAAAGG
AGGGACAGAAAAGTAACCACTTCTTAAGTGGAATATTCTCATAAGCTACCTTTTGTAAGT
GCCATGTTTATGACCTAATCATTCCAAGTTTTGCATTGTCTGACTGCCACTCCTTTCTTT
CAAGGACAGTGTTTTTGTAGTAAAATCACTGGTTTATACAAAGCTTTATTTAGGGGGTAA
AGTTAAGCTGCTAAAACCCCATGTTGGCTGCTGCTGTTGAAATACTGTGCTTTGGGAGTA
AAAAAAAAAGTTATTTCTTTGTCTTAAAGAATTTTAAGAAAATGGGTTAGTCATGAGACT
TATTCATCTTTCCAGGGAACATACTGATTGGTCTTAAAGACTAGACAGTTAAGTAAATGG
TGGCTGGAACATCTATTTTTCTACAAAACTGGAAAAATGAACCCGGTTCTAGAGAATGTA
TGACAAAATAAAACATGTGAAGCAGTGTTGATTCTTTATTGGGAGTACATTTATTTTAGG
TCTTTTAAACTTTTTTCACACAATTACATTTTAAATCACATAAAGGAGCAGTTTAAACCT
AGGGAATTTAAACTTTGTTCCTTGAAAACTTAAAGAGTACAATATTAAATAAATTCTTTT
AATATTATACCTGGGAAGTAATATTATACTACTTCATTGTTTTTTGATTTGTTTGTCTTG
GACCTCAAAACAAAATTCCTAAAACAGATATACCTTTCCTTCATACTTTTCTCTTTTGTT
GCTTTTTAGGCCTGCACCCATGGCATATGGAAGTTTCCAAACTAGGCATTGAATTGGAAC
TACAGCTCCCAGCCTATGCCACTGCCACAGCTACGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTTGTATATGAAGCCATTATAATGGTTTTAGAGTCAACTGGAGAAAGTACCTTTAAAATG
ATTTTGGATTTATTAAAATCTCTTTGGAAATCTTCTACCATTACTCTAGACCAAATGAAA
AGAGGTTATGAGAGAATTTACAATGAAATTCCAGACATTAATCTAGACGTCCCACATTCA
TACTCCATGCTTGAGCGATTTGTAGAAGAATGTTTTCAGGCCGGAATAATTTCCAAACAG
CTCAGAGATCTTTGTCCTTCAAGGGGCAGAAAACGTTTTGTAAGTGAAGGAGATGGAGGT
CGTCTTAAACCAGAGAGCTACTGAATATAAAAACTCTTGCAAGTCTTAGATGTTATAAAA
AATACATATATCTGAATTGTAAGAGTTGTTAGCACAGTTTTTTTTTTTTTTTTTTTTTTT
TCAAAGCACTTGTTTTGGGTTTAAGGCATTTCCGAAATTTTGTAAACTTACATTTAAGGG
GAATTTTTAAAGGAAGTGTTTTTTTTTTCTTTCTTTTTCTTTTTTCCGAGGGTGTAAAGG
AGGGACAGAAAAGTAACCACTTCTTAAGTGGAATATTCTCATAAGCTACCTTTTGTAAGT
GCCATGTTTATGACCTAATCATTCCAAGTTTTGCATTGTCTGACTGCCACTCCTTTCTTT
CAAGGACAGTGTTTTTGTAGTAAAATCACTGGTTTATACAAAGCTTTATTTAGGGGGTAA
AGTTAAGCTGCTAAAACCCCATGTTGGCTGCTGCTGTTGAAATACTGTGCTTTGGGAGTA
AAAAAAAAAGTTATTTCTTTGTCTTAAAGAATTTTAAGAAAATGGGTTAGTCATGAGACT
TATTCATCTTTCCAGGGAACATACTGATTGGTCTTAAAGACTAGACAGTTAAGTAAATGG
TGGCTGGAACATCTATTTTTCTACAAAACTGGAAAAATGAACCCGGTTCTAGAGAATGTA
TGACAAAATAAAACATGTGAAGCAGTGTTGATTCTTTATTGGGAGTACATTTATTTTAGG
TCTTTTAAACTTTTTTCACACAATTACATTTTAAATCACATAAAGGAGCAGTTTAAACCT
AGGGAATTTAAACTTTGTTCCTTGAAAACTTAAAGAGTACAATATTAAATAAATTCTTTT
AATATTATACCTGGGAAGTAATATTATACTACTTCATTGTTTTTTGATTTGTTTGTCTTG
GACCTCAAAACAAAATTCCTAAAACAGATATACCTTTCCTTCATACTTTTCTCTTTTGTT
GCTTTTTAGGCCTGCACCCATGGCATATGGAAGTTTCCAAACTAGGCATTGAATTGGAAC
TACAGCTCCCAGCCTATGCCACTGCCACAGCTACGT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
124-264, gnl|bosTau2|chr26 (20306401-20306261) |
|
124-264, gnl|canFam2|chr28 (25224547-25224703) |
|
124-264, gnl|danRer3|chr22 (41245798-41245954) |
|
124-264, gnl|dasNov1|scaffold_632 (32473-32318) |
|
124-264, gnl|echTel1|scaffold_238124 (224-68) |
|
124-264, gnl|fr1|chrUn (226409317-226409161) |
|
124-264, gnl|galGal2|chr6 (25215481-25215634) |
|
124-264, gnl|hg17|chr10 (112645683-112645839) |
|
124-264, gnl|Hg17|chr10 (112645696-112645836) |
|
124-264, gnl|loxAfr1|scaffold_128 (10267-10110) |
|
124-264, gnl|mm7|chr19 (53840055-53840208) |
|
124-264, gnl|Mm7|chr19 (53840065-53840205) |
|
124-264, gnl|monDom2|scaffold_14 (52193052-52192887) |
|
124-264, gnl|oryCun1|scaffold_168581 (45170-45018) |
|
124-264, gnl|panTro1|chr8 (114571207-114571363) |
|
124-264, gnl|rheMac2|chr9 (110599133-110599289) |
|
124-264, gnl|rn3|chr1 (260411005-260411158) |
|
124-264, gnl|tetNig1|chr18 (2426372-2426519) |
|
124-264, gnl|xenTro1|scaffold_1382 (75154-74998) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
124-264, gnl|bosTau2|chr26 (20306401-20306261) |
|
124-264, gnl|canFam2|chr28 (25224547-25224703) |
|
124-264, gnl|danRer3|chr22 (41245798-41245954) |
|
124-264, gnl|dasNov1|scaffold_632 (32473-32318) |
|
124-264, gnl|echTel1|scaffold_238124 (224-68) |
|
124-264, gnl|fr1|chrUn (226409317-226409161) |
|
124-264, gnl|galGal2|chr6 (25215481-25215634) |
|
124-264, gnl|hg17|chr10 (112645683-112645839) |
|
124-264, gnl|Hg17|chr10 (112645696-112645836) |
|
124-264, gnl|loxAfr1|scaffold_128 (10267-10110) |
|
124-264, gnl|mm7|chr19 (53840055-53840208) |
|
124-264, gnl|Mm7|chr19 (53840065-53840205) |
|
124-264, gnl|monDom2|scaffold_14 (52193052-52192887) |
|
124-264, gnl|oryCun1|scaffold_168581 (45170-45018) |
|
124-264, gnl|panTro1|chr8 (114571207-114571363) |
|
124-264, gnl|rheMac2|chr9 (110599133-110599289) |
|
124-264, gnl|rn3|chr1 (260411005-260411158) |
|
124-264, gnl|tetNig1|chr18 (2426372-2426519) |
|
124-264, gnl|xenTro1|scaffold_1382 (75154-74998) |
|
mga (1.28164) |
|
sag (1.27901) |
|
ova (0.903926) |
|
rec (0.865351) |
|
lyg (0.798616) |
|
mgp (0.692042) |
|
sin (0.524843) |
|
col (0.390016) |
|
tra (0.369276) |
|
mgm (0.360685) |
|
sme (0.305437) |
|
isp (0.300752) |
|
pty (0.285429) |
|
fce (0.271592) |
|
eru (0.240096) |
|
pgl (0.236967) |
|
cty (0.20816) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
gul (0.177588) |
|
fty (0.17584) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
nco (0.161734) |
|
fco (0.157208) |
|
fat (0.147427) |
|
lin (0.145603) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
ret (0.128733) |
|
thg (0.126791) |
|
med (0.116252) |
|
jca (0.11396) |
|
spc (0.113366) |
|
jej (0.0989218) |
|
mga (1.28164) |
|
sag (1.27901) |
|
ova (0.903926) |
|
rec (0.865351) |
|
lyg (0.798616) |
|
mgp (0.692042) |
|
sin (0.524843) |
|
col (0.390016) |
|
tra (0.369276) |
|
mgm (0.360685) |
|
sme (0.305437) |
|
isp (0.300752) |
|
pty (0.285429) |
|
fce (0.271592) |
|
eru (0.240096) |
|
pgl (0.236967) |
|
cty (0.20816) |
|
hea (0.204499) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
gul (0.177588) |
|
fty (0.17584) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
nco (0.161734) |
|
fco (0.157208) |
|
fat (0.147427) |
|
lin (0.145603) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
ret (0.128733) |
|
thg (0.126791) |
|
med (0.116252) |
|
jca (0.11396) |
|
spc (0.113366) |
|
jej (0.0989218) |
