Non-Coding RNA Search

Ss1.1-Pig4-TMW8041H16.3

Sequence:


               
               CCCTGCCTCGGTGAGTGGCTGCGGGAGGCAGGGAGGTAGGTGGGCCACGGAGTATAGCCG
CGCCTCGGGTCTTCAGCGGTGCGTGTCAACTGTGCCCCCGCGGACCCACGATGCCGCAGT
ACCAGACTTGGGAGGAGTTCAGCCGCGCGGCCGAGAAACTCTACCTCGCTGACCCCATGA
AGGCACGTGTGGTTCTCAAATATAGGCATTCTGATGGGAGTTTGTGTATTAAAGTAACAG
ATGACTTAGTTTGTTTGGTGTATAGAACAGACCAAGCTCAAGATGTAAAGAAGATTGAGA
AATTCCACAGTCAACTAATGCGACTTATGGTAGCCAAGGAATCCCGCAGTGTTGCCATGG
AAACGGATTGAATGGTTTGAAATGAAGACTGTCCTGTCCTTGGGAAGTAAATATCTTTTG
AATTTCAGAAAGTGTTGGGACAGAAAATACTTTATGTAACTAAGTGGGCTATTCAGAAGC
CAAGAGATCACTTTTTGTACTTTGTTTTTTAATGTTTACTTTAGAGAGCTGGGAATGTTA
AGTGCTTTCAGTTAGAAAGCCTTTATTTATTTTTGGAAATTAAACAAGAAATGCATCTCT
CTTGGAAACTTTTCGCAGAGGATTTGATGCTGGGCAAAATAAATACTTCTCTGGTAAGTT
TGTATCAGTAATTTGAAAATGAGATATCAAGAAAAGCCAATTCTTCCTTGAATTTAGGGT
ATCTGTCTTTAAAAGAAAATTAGGTGTAACCATTTTGCTGGACTGAAACAAACTTTGTGC
TGTTGATGACGAGCAGATGTAAAATACAGTAACTGGAATTAATTGCTCACAGTATGTATG
CCTGATTATATAGAGTAGTATAGTCTCAATTATATTTAAAAATAATTATTAGGACAAGTA
TGCTTTACCTTAAACTTTACAAATTTAAACTATATTTTTAAATATAAAGGATTCATGGCA
TCATTAACTTGTTGAGCAAAGACTTATTTTGAATCTAGTCTTCAGTGCCCTGAAAGATCT
GCAGTTACTTTAAAAGCATGAGCAGAATGAAACCACCATATTACAGAAATATTTGCCACA
TATTTGCCATCCATGTTTTCTCAAAGGGCTAAGGATTTTTTGAACTGTTAAATCTTCGCA
TACCTCTGTGACACCCCTGCCCAATTCTCCCTTTATGACTTAACCACGGCGTTAAGCGTG
ACTGTCACAACTCATGTTTTCCAGTAAACCGGAAGTATGGGATTGTTTGGTATTTATCTT
ATATTTGTAACCTGAATTTTACCACCTAAATGTAATGTTCACATGTTGATTCCTACATTA
AAATATTTTTTGTTAGGAATTTGTTTTATTGACCAGCGTTTTAACATGGAAAGTTTCATT
AGCCATACGAATGTTGACGTGTTTCAGAGAGGTTAGTAAATAAAATATTACGTGAGTATA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGCCTCGGTGAGTGGCTGCGGGAGGCAGGGAGGTAGGTGGGCCACGGAGTATAGCCG
CGCCTCGGGTCTTCAGCGGTGCGTGTCAACTGTGCCCCCGCGGACCCACGATGCCGCAGT
ACCAGACTTGGGAGGAGTTCAGCCGCGCGGCCGAGAAACTCTACCTCGCTGACCCCATGA
AGGCACGTGTGGTTCTCAAATATAGGCATTCTGATGGGAGTTTGTGTATTAAAGTAACAG
ATGACTTAGTTTGTTTGGTGTATAGAACAGACCAAGCTCAAGATGTAAAGAAGATTGAGA
AATTCCACAGTCAACTAATGCGACTTATGGTAGCCAAGGAATCCCGCAGTGTTGCCATGG
AAACGGATTGAATGGTTTGAAATGAAGACTGTCCTGTCCTTGGGAAGTAAATATCTTTTG
AATTTCAGAAAGTGTTGGGACAGAAAATACTTTATGTAACTAAGTGGGCTATTCAGAAGC
CAAGAGATCACTTTTTGTACTTTGTTTTTTAATGTTTACTTTAGAGAGCTGGGAATGTTA
AGTGCTTTCAGTTAGAAAGCCTTTATTTATTTTTGGAAATTAAACAAGAAATGCATCTCT
CTTGGAAACTTTTCGCAGAGGATTTGATGCTGGGCAAAATAAATACTTCTCTGGTAAGTT
TGTATCAGTAATTTGAAAATGAGATATCAAGAAAAGCCAATTCTTCCTTGAATTTAGGGT
ATCTGTCTTTAAAAGAAAATTAGGTGTAACCATTTTGCTGGACTGAAACAAACTTTGTGC
TGTTGATGACGAGCAGATGTAAAATACAGTAACTGGAATTAATTGCTCACAGTATGTATG
CCTGATTATATAGAGTAGTATAGTCTCAATTATATTTAAAAATAATTATTAGGACAAGTA
TGCTTTACCTTAAACTTTACAAATTTAAACTATATTTTTAAATATAAAGGATTCATGGCA
TCATTAACTTGTTGAGCAAAGACTTATTTTGAATCTAGTCTTCAGTGCCCTGAAAGATCT
GCAGTTACTTTAAAAGCATGAGCAGAATGAAACCACCATATTACAGAAATATTTGCCACA
TATTTGCCATCCATGTTTTCTCAAAGGGCTAAGGATTTTTTGAACTGTTAAATCTTCGCA
TACCTCTGTGACACCCCTGCCCAATTCTCCCTTTATGACTTAACCACGGCGTTAAGCGTG
ACTGTCACAACTCATGTTTTCCAGTAAACCGGAAGTATGGGATTGTTTGGTATTTATCTT
ATATTTGTAACCTGAATTTTACCACCTAAATGTAATGTTCACATGTTGATTCCTACATTA
AAATATTTTTTGTTAGGAATTTGTTTTATTGACCAGCGTTTTAACATGGAAAGTTTCATT
AGCCATACGAATGTTGACGTGTTTCAGAGAGGTTAGTAAATAAAATATTACGTGAGTATA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|134890|sp|P21262|SRP09_CANFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|134890|sp|P21262|SRP09_CANFA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-183, gnl|bosTau2|chr16 (17154702-17154881)
               

               
               1-183, gnl|Hg17|chr1 (222272287-222272450)
               

               
               1-183, gnl|Mm7|chr1 (182109498-182109667)
               


               
               252-1433, gnl|bosTau2|chr16 (17163848-17165041)
               

               
               252-1433, gnl|Hg17|chr1 (222283677-222284895)
               

               
               252-1433, gnl|Mm7|chr1 (182116027-182117069)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-183, gnl|bosTau2|chr16 (17154702-17154881)
               

               
               1-183, gnl|Hg17|chr1 (222272287-222272450)
               

               
               1-183, gnl|Mm7|chr1 (182109498-182109667)
               


               
               252-1433, gnl|bosTau2|chr16 (17163848-17165041)
               

               
               252-1433, gnl|Hg17|chr1 (222283677-222284895)
               

               
               252-1433, gnl|Mm7|chr1 (182116027-182117069)

Expressed library(ies): 30 entry(ies)

More info

Expressed library(ies): 30 entry(ies)

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               fco (0.943248)
               

               
               tes (0.831255)
               

               
               liv (0.731422)
               

               
               sin (0.69979)
               

               
               kid (0.389206)
               

               
               ret (0.3862)
               

               
               gul (0.355177)
               

               
               cut (0.339847)
               

               
               nbm (0.297974)
               

               
               cte (0.29274)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.943248)
               

               
               tes (0.831255)
               

               
               liv (0.731422)
               

               
               sin (0.69979)
               

               
               kid (0.389206)
               

               
               ret (0.3862)
               

               
               gul (0.355177)
               

               
               cut (0.339847)
               

               
               nbm (0.297974)
               

               
               cte (0.29274)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	1-183, gnl\|bosTau2\|chr16 (17154702-17154881)
	1-183, gnl\|Hg17\|chr1 (222272287-222272450)
	1-183, gnl\|Mm7\|chr1 (182109498-182109667)

	252-1433, gnl\|bosTau2\|chr16 (17163848-17165041)
	252-1433, gnl\|Hg17\|chr1 (222283677-222284895)
	252-1433, gnl\|Mm7\|chr1 (182116027-182117069)

	fco (0.943248)
	tes (0.831255)
	liv (0.731422)
	sin (0.69979)
	kid (0.389206)
	ret (0.3862)
	gul (0.355177)
	cut (0.339847)
	nbm (0.297974)
	cte (0.29274)
	bla (0.248694)
	tra (0.246184)
	cbe (0.239234)
	spc (0.226732)
	cty (0.20816)
	fcc (0.197785)
	nlu (0.191681)
	fty (0.17584)
	cag (0.151194)
	isp (0.150376)
	bfe (0.149858)
	fat (0.147427)
	ski (0.146735)
	lin (0.145603)
	nca (0.136874)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	eru (0.120048)
	ebs (0.118301)