Non-Coding RNA Search

Ss1.1-Pig4-TMW8041I03.3

Sequence:


               
               AGTGAAGCAAAGGCCTTTATAAGACGCTGTTTGGCATACCGAAAAGAAGATAGATTTGAC
GTGCACCAACTGGCAAATGACCCCTACCTTCTCCCGCACATGAGAAGATCCAATTCTTCA
GGAAACTTACACATGGCTGGGCTGACGGCATCCCCTACACCCCCTTCTTCAAGCATAATT
ACTTACTGACTCTTCTCCAAAAATCGGCATGATGTCTTTGAATTGCTTCCAGATGCACAC
TTGACTTTGAGAGCATTTGAGTGTTTTTGTTTTCTTTTTTACAGAGGATATGGTTGAGAA
CTGTTTGTGAACTGAAGTTCTTCATAGCATCGTTTGTAGAGTGGATCATGGACAGTGAAT
AAATGTAAACTTCTGACTGTAGCCTTGAGCAGTGACAGGTGACTGCCTGTTGCACAGAAA
CAGGAATACCATGTTAAGATAGGGAAAAAATGGTTGTTTGTTTGGGGAACACTGTAAATA
ACGTTTATAATGCTTAAATTCATTTGGTTGTTACTAGAGAGTTCTAATATGAAGGGTAGT
TTTTCATTATTTAAAAACACATAGAAAAAATGTGAGACATATTTCTAACACAAGAACTAT
ATACAGTGCCTGGATACATTCTTCAGCATTCAGCAGTTCATCTGCTGAAACCAAAGTAAG
AACTGAATGACAGTGACAGTTGTGTTTTATAGTAATAGAATGTGAGAGTTAGAATCTTTG
GACAAAGTTAGACTTTGTCATTTGCCTCTTCTGGCTTTTACCAAGTTGTACCTCGAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGAAGCAAAGGCCTTTATAAGACGCTGTTTGGCATACCGAAAAGAAGATAGATTTGAC
GTGCACCAACTGGCAAATGACCCCTACCTTCTCCCGCACATGAGAAGATCCAATTCTTCA
GGAAACTTACACATGGCTGGGCTGACGGCATCCCCTACACCCCCTTCTTCAAGCATAATT
ACTTACTGACTCTTCTCCAAAAATCGGCATGATGTCTTTGAATTGCTTCCAGATGCACAC
TTGACTTTGAGAGCATTTGAGTGTTTTTGTTTTCTTTTTTACAGAGGATATGGTTGAGAA
CTGTTTGTGAACTGAAGTTCTTCATAGCATCGTTTGTAGAGTGGATCATGGACAGTGAAT
AAATGTAAACTTCTGACTGTAGCCTTGAGCAGTGACAGGTGACTGCCTGTTGCACAGAAA
CAGGAATACCATGTTAAGATAGGGAAAAAATGGTTGTTTGTTTGGGGAACACTGTAAATA
ACGTTTATAATGCTTAAATTCATTTGGTTGTTACTAGAGAGTTCTAATATGAAGGGTAGT
TTTTCATTATTTAAAAACACATAGAAAAAATGTGAGACATATTTCTAACACAAGAACTAT
ATACAGTGCCTGGATACATTCTTCAGCATTCAGCAGTTCATCTGCTGAAACCAAAGTAAG
AACTGAATGACAGTGACAGTTGTGTTTTATAGTAATAGAATGTGAGAGTTAGAATCTTTG
GACAAAGTTAGACTTTGTCATTTGCCTCTTCTGGCTTTTACCAAGTTGTACCTCGAAATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               244-340, - strand, RNAz p=0.700687

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               244-340, - strand, RNAz p=0.700687

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-780, gnl|bosTau2|chr2 (16275137-16275896)
               

               
               10-780, gnl|Hg17|chr2 (171675976-171675182)
               

               
               10-780, gnl|Mm7|chr2 (70552878-70552157)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-780, gnl|bosTau2|chr2 (16275137-16275896)
               

               
               10-780, gnl|Hg17|chr2 (171675976-171675182)
               

               
               10-780, gnl|Mm7|chr2 (70552878-70552157)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               lun (0.150489)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	10-780, gnl\|bosTau2\|chr2 (16275137-16275896)
	10-780, gnl\|Hg17\|chr2 (171675976-171675182)
	10-780, gnl\|Mm7\|chr2 (70552878-70552157)