Non-Coding RNA Search

Ss1.1-Pig4-TMW8041I13.5

Sequence:


               
               TGGTTTCCAGCTCCCGATCCTACTGCGACTGAGGGAATCGTCGCGAAAGGATGGTGTGCG
AAAAATGTGAAAAGAAACTTGGTACTGTTATCACTCCAGATACATGGAAAGATGGTGCAA
GGAATACCACAGAAAGTGGAGGAAGAAAGCTGAATGAAAATAAAGCTTTGACTTCAAAAA
AAGCGAGATTTGACCCATATGGAAAGAATAAGTTCTCCACTTGCAGAATTTGTAAAAGTT
CTGTGCACCAGCCGGGTTCTCATTACTGCCAGGGCTGTGCTTACAAAAAGGGCATCTGCG
CTATGTGTGGAAAAAAGGTTTTGGATACCAAAAACTACAAACAAACGTCTGTCTAAATGT
ATTGAAGTATCTACCTTTCCATATGATTTACTTTTTGCTTTGAATTTTCAAGGTATAACA
TAGATATTCAATTTACAAAATAACATGCCTTTAGATAATTACGTTTAAACCAGGGAAGTA
GATGGGTATTCATTCTTTTGCTCTCAAGAAGTTCTGAATGGCAACAGTATAAAGTTTTCT
GCCTAAAGGTTTTATTTTCCTTACAAATATCTTACTGAACTGGAATAAGTGATAAATTAA
CAAAAAAAATATTTTCCCAGTTCTGTATGCACTTTTTATTTATCATTACTCATATAATTT
TTATTATCTTTTTTTCTACTTTATATGTAGATCTTGAAAAAGTGAGAAGGAGGTTATTAA
TATTGGCTTTGAACTTGGCATTTAGATTTGTAATTCTTCACTCATCCCCTTTTTATTCAT
ATAGTTCTTAGGGTCAGCAGTCCCTTAATTAATTGTGGCTTCATAGAGCATTTAAATATC
TGAGACCATTGTTGCTAAATAGTTCCTAAGTGATTAGCTCAGACCCAAATCAAACAAAAG
TTGTATTTGTGGTATTTTTGATTTGTTCTTGAAGCCAAAGTGCCAGTACCTTTCACATGA
GAACAGGAACACAAGGGATACCCTCTATGTGTCCACATCAACACACTGGATTTGAGAAAA
ACACGTATTACACATTACCTTGAATTCAGACCATCATGAAAGCCAAGAGAACAGTGTGCA
TCTATCATGATAGATCACAATCCTTTGGGAAAGTGCTTTGAAGTAGAAACTAAACTTTTT
TTTTTCTTACTTCCTCTCCTTTTCCACCCCCCCCCCCGCCAAATAAATAGACTAAGCAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTTTCCAGCTCCCGATCCTACTGCGACTGAGGGAATCGTCGCGAAAGGATGGTGTGCG
AAAAATGTGAAAAGAAACTTGGTACTGTTATCACTCCAGATACATGGAAAGATGGTGCAA
GGAATACCACAGAAAGTGGAGGAAGAAAGCTGAATGAAAATAAAGCTTTGACTTCAAAAA
AAGCGAGATTTGACCCATATGGAAAGAATAAGTTCTCCACTTGCAGAATTTGTAAAAGTT
CTGTGCACCAGCCGGGTTCTCATTACTGCCAGGGCTGTGCTTACAAAAAGGGCATCTGCG
CTATGTGTGGAAAAAAGGTTTTGGATACCAAAAACTACAAACAAACGTCTGTCTAAATGT
ATTGAAGTATCTACCTTTCCATATGATTTACTTTTTGCTTTGAATTTTCAAGGTATAACA
TAGATATTCAATTTACAAAATAACATGCCTTTAGATAATTACGTTTAAACCAGGGAAGTA
GATGGGTATTCATTCTTTTGCTCTCAAGAAGTTCTGAATGGCAACAGTATAAAGTTTTCT
GCCTAAAGGTTTTATTTTCCTTACAAATATCTTACTGAACTGGAATAAGTGATAAATTAA
CAAAAAAAATATTTTCCCAGTTCTGTATGCACTTTTTATTTATCATTACTCATATAATTT
TTATTATCTTTTTTTCTACTTTATATGTAGATCTTGAAAAAGTGAGAAGGAGGTTATTAA
TATTGGCTTTGAACTTGGCATTTAGATTTGTAATTCTTCACTCATCCCCTTTTTATTCAT
ATAGTTCTTAGGGTCAGCAGTCCCTTAATTAATTGTGGCTTCATAGAGCATTTAAATATC
TGAGACCATTGTTGCTAAATAGTTCCTAAGTGATTAGCTCAGACCCAAATCAAACAAAAG
TTGTATTTGTGGTATTTTTGATTTGTTCTTGAAGCCAAAGTGCCAGTACCTTTCACATGA
GAACAGGAACACAAGGGATACCCTCTATGTGTCCACATCAACACACTGGATTTGAGAAAA
ACACGTATTACACATTACCTTGAATTCAGACCATCATGAAAGCCAAGAGAACAGTGTGCA
TCTATCATGATAGATCACAATCCTTTGGGAAAGTGCTTTGAAGTAGAAACTAAACTTTTT
TTTTTCTTACTTCCTCTCCTTTTCCACCCCCCCCCCCGCCAAATAAATAGACTAAGCAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62822287|gb|AAY14836.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62822287|gb|AAY14836.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               115-226, + strand, RNAz p=0.824513

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-226, + strand, RNAz p=0.824513

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               115-1212, gnl|bosTau2|chr13 (10312603-10311532)
               

               
               115-1212, gnl|Hg17|chr2 (46762535-46763829)
               

               
               115-1212, gnl|Mm7|chr11 (5630601-5629380)
               


               
               291-622, gnl|bosTau2|chr11 (23026208-23026518)
               

               
               291-622, gnl|Hg17|chr2 (46762952-46763264)
               

               
               291-622, gnl|Mm7|chr17 (85337419-85337760)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               115-1212, gnl|bosTau2|chr13 (10312603-10311532)
               

               
               115-1212, gnl|Hg17|chr2 (46762535-46763829)
               

               
               115-1212, gnl|Mm7|chr11 (5630601-5629380)
               


               
               291-622, gnl|bosTau2|chr11 (23026208-23026518)
               

               
               291-622, gnl|Hg17|chr2 (46762952-46763264)
               

               
               291-622, gnl|Mm7|chr17 (85337419-85337760)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               nje (0.33184)
               

               
               liv (0.292569)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               med (0.232504)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.33184)
               

               
               liv (0.292569)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               med (0.232504)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	115-1212, gnl\|bosTau2\|chr13 (10312603-10311532)
	115-1212, gnl\|Hg17\|chr2 (46762535-46763829)
	115-1212, gnl\|Mm7\|chr11 (5630601-5629380)

	291-622, gnl\|bosTau2\|chr11 (23026208-23026518)
	291-622, gnl\|Hg17\|chr2 (46762952-46763264)
	291-622, gnl\|Mm7\|chr17 (85337419-85337760)

	nje (0.33184)
	liv (0.292569)
	thg (0.253582)
	tra (0.246184)
	cbe (0.239234)
	pan (0.23596)
	med (0.232504)
	aor (0.195274)
	nep (0.183925)
	sag (0.182715)
	fbs (0.175346)
	sin (0.174948)
	rec (0.17307)
	nco (0.161734)
	mga (0.160205)
	kid (0.129735)
	ova (0.129132)
	ret (0.128733)
	cbr (0.127975)
	pgl (0.118483)
	ecc (0.115035)
	ldo (0.0970026)