Ss1.1-Pig4-TMW8041I19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCGAGAAAGCTGGAGAAGAGCAGAAAGAAACTGCCCGTGACGGCTAGATTCCGGAGGCC ACCTCGTACCCCTGGACCCCCACGGAACTTGGCACCCTCGGGAGCCCCGCAGTCCTCTCG GCCCGGCTTTCGGGCGCTGGCCGTGCAGCCCGCGCCTCGGCTCGCTGGAAATCTCTCTGG GACGCGGAGACAGCAGCTCTCGCCCGGTAGCCGATAACGGGGAATGGAGACCAACTGCAG AAAACTAGTGTCGGCGTGTGTGCAATTAGAGAAAGACAAGAGCCAGCAGGGAAAGAATGA GGATGTGGGCGCTGAAGACCCGTCCAAGAAGAAGAGGCAACGGCGGCAGCGGACTCACTT CACCAGCCAGCAGCTGCAGGAATTGGAGGCCACTTTCCAGAGGAACCGCTACCCGGACAT GTCCACGCGTGAAGAAATCGCCGTGTGGACCAACCTTACGGAAGCCCGAGTCCGGGTTTG GTTCAAGAATCGCCGGGCCAAATGGAGAAAGCGAGAGCGCAACCAGCAGGCTGAGCTGTG CAAGAATGGCTTTGGGCCGCAGTTCAACGGGCTTATGCAGCCCTACGACGACATGTACCC AGGCTACTCATACAACAACTGGGCGGCCAAGGGCCTCACGTCGGCCTCTCTGTCCACCAA GAGCTTCCCTTTCTTCAACTCTATGAACGTCAATCCCCTGTCGTCGCAGAGCATGTTCTC CCCGCCCAACTCCATCTCGTCCATGAGCATGTCGTCCAGTATGGTGCCCTCAGCGGTGAC AGGAGTCCCGGGCTCCAGCCTCAACAGCCTGAATAACTTGAACAACCTGAGCAGCCCGTC GCTGAATTCCGCGGTGCCGACGCCCGCCTGTCCTTACGCACCGCCAACTCCTCCGTACGT TTATAGGGACACGTGTAACTCGAGCCTGGCCAGCCTGAGACTGAAAGCAAAGCAGCACTC CAGCTTCGGCTACGCCAGCGTGCAGAACCCGGCGTCCAACCTGAGTGCTTGCCAGTACGC CGTGGACCGGCCTGTGTGAGCTGCGCCCACTGCGCGGGGATCCTAGGACCGTGCCAGATG GGGCAATTCTGCCCTTGAAAGACTGGGAATTACGCTAGAAGGTCGTGGGCACTCAAGAAA GGGAGAGAGAAGATATAGGAGAGGAAAGGAAACCACTGAATTAAAAGAGAGCTCCTTTGA TTTCAAAGGAATTTCCTCAAAGTCTAACATCTTTCACTAAAAGTATTTCCGACAGTTCCA AGGACACACACAAATGTTTGACTGGATATGACATTTTAACATTACTATAAGCTTGTTATT TTTTAAGTTTAGCATTGTTAACATTGAAATGACTGAAAGGATGTATATATATGGAAATGT CAAATTAATTTTATAAAAAGCAGTTGTTAGTAATATCACAACAGTGTTTTTAAAGGTTAG GCTTTAAAATAAAGCATGTTATACAGAAGCGATTAGGATTTTTCGCTTGCAAGCAAAGGA ATGTATATACTAAATGCCACACTGTATGTTTCTAACATATTATTATTATAAAAAAATGTG TGAATATCAGTTTTAGAATAGTTTCTCTGGTGGATGCAATGATGTTTCTGAAACTGCTAT GTACAACCTACCCTGTGTATAACATTTCGTACAATATTATTGTTTTACTTTTCAGCAAAT ATGAAAAATGTGTTTTATTTCATGGAGTAAAATATACTGCATACAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCGAGAAAGCTGGAGAAGAGCAGAAAGAAACTGCCCGTGACGGCTAGATTCCGGAGGCC ACCTCGTACCCCTGGACCCCCACGGAACTTGGCACCCTCGGGAGCCCCGCAGTCCTCTCG GCCCGGCTTTCGGGCGCTGGCCGTGCAGCCCGCGCCTCGGCTCGCTGGAAATCTCTCTGG GACGCGGAGACAGCAGCTCTCGCCCGGTAGCCGATAACGGGGAATGGAGACCAACTGCAG AAAACTAGTGTCGGCGTGTGTGCAATTAGAGAAAGACAAGAGCCAGCAGGGAAAGAATGA GGATGTGGGCGCTGAAGACCCGTCCAAGAAGAAGAGGCAACGGCGGCAGCGGACTCACTT CACCAGCCAGCAGCTGCAGGAATTGGAGGCCACTTTCCAGAGGAACCGCTACCCGGACAT GTCCACGCGTGAAGAAATCGCCGTGTGGACCAACCTTACGGAAGCCCGAGTCCGGGTTTG GTTCAAGAATCGCCGGGCCAAATGGAGAAAGCGAGAGCGCAACCAGCAGGCTGAGCTGTG CAAGAATGGCTTTGGGCCGCAGTTCAACGGGCTTATGCAGCCCTACGACGACATGTACCC AGGCTACTCATACAACAACTGGGCGGCCAAGGGCCTCACGTCGGCCTCTCTGTCCACCAA GAGCTTCCCTTTCTTCAACTCTATGAACGTCAATCCCCTGTCGTCGCAGAGCATGTTCTC CCCGCCCAACTCCATCTCGTCCATGAGCATGTCGTCCAGTATGGTGCCCTCAGCGGTGAC AGGAGTCCCGGGCTCCAGCCTCAACAGCCTGAATAACTTGAACAACCTGAGCAGCCCGTC GCTGAATTCCGCGGTGCCGACGCCCGCCTGTCCTTACGCACCGCCAACTCCTCCGTACGT TTATAGGGACACGTGTAACTCGAGCCTGGCCAGCCTGAGACTGAAAGCAAAGCAGCACTC CAGCTTCGGCTACGCCAGCGTGCAGAACCCGGCGTCCAACCTGAGTGCTTGCCAGTACGC CGTGGACCGGCCTGTGTGAGCTGCGCCCACTGCGCGGGGATCCTAGGACCGTGCCAGATG GGGCAATTCTGCCCTTGAAAGACTGGGAATTACGCTAGAAGGTCGTGGGCACTCAAGAAA GGGAGAGAGAAGATATAGGAGAGGAAAGGAAACCACTGAATTAAAAGAGAGCTCCTTTGA TTTCAAAGGAATTTCCTCAAAGTCTAACATCTTTCACTAAAAGTATTTCCGACAGTTCCA AGGACACACACAAATGTTTGACTGGATATGACATTTTAACATTACTATAAGCTTGTTATT TTTTAAGTTTAGCATTGTTAACATTGAAATGACTGAAAGGATGTATATATATGGAAATGT CAAATTAATTTTATAAAAAGCAGTTGTTAGTAATATCACAACAGTGTTTTTAAAGGTTAG GCTTTAAAATAAAGCATGTTATACAGAAGCGATTAGGATTTTTCGCTTGCAAGCAAAGGA ATGTATATACTAAATGCCACACTGTATGTTTCTAACATATTATTATTATAAAAAAATGTG TGAATATCAGTTTTAGAATAGTTTCTCTGGTGGATGCAATGATGTTTCTGAAACTGCTAT GTACAACCTACCCTGTGTATAACATTTCGTACAATATTATTGTTTTACTTTTCAGCAAAT ATGAAAAATGTGTTTTATTTCATGGAGTAAAATATACTGCATACAAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1110-1219, - strand, RNAz p=0.690543 | |
| 1414-1533, - strand, RNAz p=0.941538 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1110-1219, - strand, RNAz p=0.690543 | |
| 1414-1533, - strand, RNAz p=0.941538 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-217, gnl|bosTau2|chr6 (7665562-7665791) | |
| 1-217, gnl|Hg17|chr4 (111915764-111915537) | |
| 1-217, gnl|Mm7|chr3 (129039664-129039886) | |
| 472-1728, gnl|bosTau2|chr6 (7684605-7685868) | |
| 472-1728, gnl|Hg17|chr4 (111897452-111896182) | |
| 472-1728, gnl|Mm7|chr3 (129058050-129059312) | |
| 475-738, gnl|bosTau2|chr26 (15366580-15366317) | |
| 475-738, gnl|Hg17|chr10 (103980849-103980586) | |
| 475-738, gnl|Mm7|chr19 (46033240-46032977) | |
| 881-1046, gnl|bosTau2|chr26 (15366155-15365985) | |
| 881-1046, gnl|canFam2|chr28 (17761586-17761764) | |
| 881-1046, gnl|danRer3|chr13 (5705795-5705649) | |
| 881-1046, gnl|echTel1|scaffold_202529 (2493-2672) | |
| 881-1046, gnl|fr1|chrUn (171445115-171445261) | |
| 881-1046, gnl|galGal2|chr6 (16035320-16035479) | |
| 881-1046, gnl|hg17|chr10 (103980237-103980415) | |
| 881-1046, gnl|Hg17|chr10 (103980424-103980254) | |
| 881-1046, gnl|loxAfr1|scaffold_13371 (6008-6186) | |
| 881-1046, gnl|mm7|chr19 (46032628-46032806) | |
| 881-1046, gnl|Mm7|chr19 (46032815-46032646) | |
| 881-1046, gnl|monDom2|scaffold_14 (61127831-61127653) | |
| 881-1046, gnl|oryCun1|scaffold_191181 (6311-6135) | |
| 881-1046, gnl|panTro1|chr8 (105736091-105736269) | |
| 881-1046, gnl|rheMac2|chr9 (101885960-101886139) | |
| 881-1046, gnl|rn3|chr1 (251616602-251616780) | |
| 881-1046, gnl|tetNig1|chrUn_random (87523776-87523607) | |
| 881-1046, gnl|xenTro1|scaffold_507 (860824-860669) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-217, gnl|bosTau2|chr6 (7665562-7665791) | |
| 1-217, gnl|Hg17|chr4 (111915764-111915537) | |
| 1-217, gnl|Mm7|chr3 (129039664-129039886) | |
| 472-1728, gnl|bosTau2|chr6 (7684605-7685868) | |
| 472-1728, gnl|Hg17|chr4 (111897452-111896182) | |
| 472-1728, gnl|Mm7|chr3 (129058050-129059312) | |
| 475-738, gnl|bosTau2|chr26 (15366580-15366317) | |
| 475-738, gnl|Hg17|chr10 (103980849-103980586) | |
| 475-738, gnl|Mm7|chr19 (46033240-46032977) | |
| 881-1046, gnl|bosTau2|chr26 (15366155-15365985) | |
| 881-1046, gnl|canFam2|chr28 (17761586-17761764) | |
| 881-1046, gnl|danRer3|chr13 (5705795-5705649) | |
| 881-1046, gnl|echTel1|scaffold_202529 (2493-2672) | |
| 881-1046, gnl|fr1|chrUn (171445115-171445261) | |
| 881-1046, gnl|galGal2|chr6 (16035320-16035479) | |
| 881-1046, gnl|hg17|chr10 (103980237-103980415) | |
| 881-1046, gnl|Hg17|chr10 (103980424-103980254) | |
| 881-1046, gnl|loxAfr1|scaffold_13371 (6008-6186) | |
| 881-1046, gnl|mm7|chr19 (46032628-46032806) | |
| 881-1046, gnl|Mm7|chr19 (46032815-46032646) | |
| 881-1046, gnl|monDom2|scaffold_14 (61127831-61127653) | |
| 881-1046, gnl|oryCun1|scaffold_191181 (6311-6135) | |
| 881-1046, gnl|panTro1|chr8 (105736091-105736269) | |
| 881-1046, gnl|rheMac2|chr9 (101885960-101886139) | |
| 881-1046, gnl|rn3|chr1 (251616602-251616780) | |
| 881-1046, gnl|tetNig1|chrUn_random (87523776-87523607) | |
| 881-1046, gnl|xenTro1|scaffold_507 (860824-860669) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| amn (0.417711) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| rec (0.17307) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| ret (0.128733) | |
| eru (0.120048) | |
| pgl (0.118483) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| rec (0.17307) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| ret (0.128733) | |
| eru (0.120048) | |
| pgl (0.118483) |