Non-Coding RNA Search

Ss1.1-Pig4-TMW8041I23.3

Sequence:


               
               TGATCACATCCCAGGGCTATGAGAAGTTGCTCAGGTCGATCTTTGAGGATGCTGGCTATT
TAAAGGCCCCAGAACAAAGCGAGCAGGCGCAGCAGGACAGGGGTGCCAAGGGCCTGGTGT
TTGAGACGCTGGAGAGCTGCCATGAGGCACATAAAGCCCTGTCAGCGGAGCTGGAGAGGC
TGCAGAGCGTGCTGACCCAGCACGGCATCCCCTACACGCAGCCTGCAGAAACTTACATCT
CTGAGCACCTGGGCCCCAAGACACCCACAGACCCCACGGCAGAGCACCTGCGCGGCGACC
CGGGGCTGCGAGCCAACAACCTGTGATCAGGCTGCGAGGCGCAATGTGGGGAGTCCCCAC
CAGAGGGCGCGCTTTCTCTTCCAGACACAGACAAGATGATAAAGATTTTTAATTTCCATT
TTATCCATACTGATAAAAATAACTCCATGAATTCTGTAAACCATTGCATAAATGCTATAG
TGTAAAAAATTTAACAAGTGTTACACTTAAACGGTTCACGACAAGGAAATGATTACACCT
TATAAATACTATACCTTCTGGGTTAAAACTCCATTCCGGTAACATTCTCCTCTAAATACT
CAAAGCAAATGTATGGATTGGGGCTCCCACACTGAGGTCTCCTGCTGACACCGAACACAC
GTGAGCTGACAAGAGGTGGGCAGCAAGAGCCGGGGCCTCGCCCAGCACCAAGTGACTCCC
ACTCCCGCTCCCACACCCGGCGCTCCCACCACCCGCAAGCAGGACAGTGACGCCCTGGGA
CGCCGGGCCTGGCCGAGCTGTGACTGGGAGGCCTGTGCAGGGTGGCCCCGGCGGCCAGGA
TGGAGTCTGGGTGGTTCTTTGGTCTTCCCACTGCACCCCGGTTCTCGGCCCGCGCCGCGC
CCCGCCCCGCCCCAGCCGTGGGAGCCGGGAGCGCGGCCCTCTGGTCCGCCGAGCTCCCCA
GCAAGAACTGACCCGAGTAGCTTATGAACACACCTAAAGCTTCATGGTTCTCCTTTACAA
TTGCAAAGTGTCCAGGCTGGATGTTGGTAATAAAACTACCCTGTTCTCCCTCAAAAGGCC
AAAGGCCTGGAGGGGGAAACAGGTGCATAAATATTAATAAAAATAATTTTAAACAGTGAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATCACATCCCAGGGCTATGAGAAGTTGCTCAGGTCGATCTTTGAGGATGCTGGCTATT
TAAAGGCCCCAGAACAAAGCGAGCAGGCGCAGCAGGACAGGGGTGCCAAGGGCCTGGTGT
TTGAGACGCTGGAGAGCTGCCATGAGGCACATAAAGCCCTGTCAGCGGAGCTGGAGAGGC
TGCAGAGCGTGCTGACCCAGCACGGCATCCCCTACACGCAGCCTGCAGAAACTTACATCT
CTGAGCACCTGGGCCCCAAGACACCCACAGACCCCACGGCAGAGCACCTGCGCGGCGACC
CGGGGCTGCGAGCCAACAACCTGTGATCAGGCTGCGAGGCGCAATGTGGGGAGTCCCCAC
CAGAGGGCGCGCTTTCTCTTCCAGACACAGACAAGATGATAAAGATTTTTAATTTCCATT
TTATCCATACTGATAAAAATAACTCCATGAATTCTGTAAACCATTGCATAAATGCTATAG
TGTAAAAAATTTAACAAGTGTTACACTTAAACGGTTCACGACAAGGAAATGATTACACCT
TATAAATACTATACCTTCTGGGTTAAAACTCCATTCCGGTAACATTCTCCTCTAAATACT
CAAAGCAAATGTATGGATTGGGGCTCCCACACTGAGGTCTCCTGCTGACACCGAACACAC
GTGAGCTGACAAGAGGTGGGCAGCAAGAGCCGGGGCCTCGCCCAGCACCAAGTGACTCCC
ACTCCCGCTCCCACACCCGGCGCTCCCACCACCCGCAAGCAGGACAGTGACGCCCTGGGA
CGCCGGGCCTGGCCGAGCTGTGACTGGGAGGCCTGTGCAGGGTGGCCCCGGCGGCCAGGA
TGGAGTCTGGGTGGTTCTTTGGTCTTCCCACTGCACCCCGGTTCTCGGCCCGCGCCGCGC
CCCGCCCCGCCCCAGCCGTGGGAGCCGGGAGCGCGGCCCTCTGGTCCGCCGAGCTCCCCA
GCAAGAACTGACCCGAGTAGCTTATGAACACACCTAAAGCTTCATGGTTCTCCTTTACAA
TTGCAAAGTGTCCAGGCTGGATGTTGGTAATAAAACTACCCTGTTCTCCCTCAAAAGGCC
AAAGGCCTGGAGGGGGAAACAGGTGCATAAATATTAATAAAAATAATTTTAAACAGTGAA
AAAAAAAAAAAA

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               12-151, gnl|bosTau2|chr25 (702270-702131)
               

               
               12-151, gnl|Hg17|chr16 (1352610-1352759)
               

               
               12-151, gnl|Mm7|chr17 (23418205-23418054)
               


               
               225-629, gnl|bosTau2|chr25 (701887-701466)
               

               
               225-629, gnl|Hg17|chr16 (1352995-1353427)
               

               
               225-629, gnl|Mm7|chr17 (23417817-23417304)
               


               
               637-1139, gnl|bosTau2|chr25 (701389-700897)
               

               
               637-1139, gnl|Hg17|chr16 (1353503-1354115)
               

               
               637-1139, gnl|Mm7|chr17 (23417227-23416663)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-151, gnl|bosTau2|chr25 (702270-702131)
               

               
               12-151, gnl|Hg17|chr16 (1352610-1352759)
               

               
               12-151, gnl|Mm7|chr17 (23418205-23418054)
               


               
               225-629, gnl|bosTau2|chr25 (701887-701466)
               

               
               225-629, gnl|Hg17|chr16 (1352995-1353427)
               

               
               225-629, gnl|Mm7|chr17 (23417817-23417304)
               


               
               637-1139, gnl|bosTau2|chr25 (701389-700897)
               

               
               637-1139, gnl|Hg17|chr16 (1353503-1354115)
               

               
               637-1139, gnl|Mm7|chr17 (23417227-23416663)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               cbr (0.383926)
               

               
               fce (0.271592)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.383926)
               

               
               fce (0.271592)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

	12-151, gnl\|bosTau2\|chr25 (702270-702131)
	12-151, gnl\|Hg17\|chr16 (1352610-1352759)
	12-151, gnl\|Mm7\|chr17 (23418205-23418054)

	225-629, gnl\|bosTau2\|chr25 (701887-701466)
	225-629, gnl\|Hg17\|chr16 (1352995-1353427)
	225-629, gnl\|Mm7\|chr17 (23417817-23417304)

	637-1139, gnl\|bosTau2\|chr25 (701389-700897)
	637-1139, gnl\|Hg17\|chr16 (1353503-1354115)
	637-1139, gnl\|Mm7\|chr17 (23417227-23416663)

	cbr (0.383926)
	fce (0.271592)
	cmu (0.186393)
	sto (0.179824)
	ill (0.175593)
	nje (0.16592)
	cki (0.165235)
	fat (0.147427)
	pty (0.142714)
	lnt (0.142308)
	cst (0.140036)
	nca (0.136874)
	pla (0.133672)
	nmm (0.132802)
	cov (0.132153)
	jej (0.0989218)