Ss1.1-Pig4-TMW8041J02.5
|
ACCCCTCCCCGGCCCTGGATTCCGCTTCCCCTTCGCTCGCGCTGCAGCCGCAGCCGCCTT
CAGGCCCTGCGCCGCCTCCAGAGTCCATGGCCGGGACGCGCTGGGTGCTCGGGGCGCTGC
TCCGGGGCTGCGGCTGCAACTGCAGCAGCTGCCGGCGCACCGGCGCCGCCTGCCTGCCCT
TTTATTCGACCGCCGGCTCCTTCCCGTCGGGCGTCTCGGGCCGTCGCCGCCTGCTGCTGC
TGCTCGGTGCCGCGGCGGCCGCCGCCTCGCACACGCGGGGCCTCCAGATCGGGCCTGCCC
CTGCCGGGAGGCTGGCGGGGCCTCCCCCCGCGGCCGCCTCCGCCGCCGCGGCGGCTGCCG
CCTCCTACCCGGCCCTGCGCGCCCCTCTGCTATCGCCGTCTTTGACGGCGGCCGCGGGTC
CGGCGCGGGGTTACTGCCAGGAGTCCAAAACTACCTACCTGGAAGACCTGCCACCTCTCC
CTGAGTATGAACTGCCTCCGTCCAAGTTAGGAGAGGAAGTGGATGATGTTTATCTCATTC
GAGCTCAAGGATTGCCGTGGTCGTGCACAGTGGAAGATGTGCTTAGCTTTTTCTCAGACT
GCAGAATTCGAAATGGTGAGAATGGAATCCACTTCCTTTTAAATAGAGATGGGAAACGAA
GAGGTGATGCCTTAATTGAAATGGAGTCAGAGCAGGACGTGCAAAAAGCCTTAGAAAAAC
ACCGTATGTACATGGGACAGCGGTATGTGGAAGTATATGAGATAAATAATGAAGATGTGG
ATGCCTTAATGAAGAACCTGCATGTCAAATCTACACCTATGGTGAATGATGGTGTGGTTC
GTTTGAGAGGACTTCCTTATAGTTGCAATGAAAAAGATATTGTAGACTTCTTCGCAGGGC
TGCATATAGTAGACATTACGTTTGTCATGGATTACAGAGGGAGAAGAAAAACAGGAGAAG
CCTACGTGCAGTTTGAAGAACCAGAAATGGCCAACCAAGCCCTGTTGAAACACAGGGAAG
AAATTGGTAACCGATATATAGAGATATTTCCAAGCAGAAGGAATGAAGTTCGAACACATG
TTGGTTCTCATAAGGGAAAGAAAATGGCCTCTTCTCCCACTGCTAAGTACATAACTGAGC
CAGAAATGGCCTTTGAAGAAGAAGTAAATGAGGATGTCCGACCCATGACAGCTTTTGAAA
GTGAAAAGGAAATAGAATTGCCTAAGGAGATGTCAGAAAAGCTTCCAGAGGCTGTTGATT
TTGGAACTACATCTTCATTACATTTTGTCCACATGAGAGGATTGCCTTTCCAAGCCAATG
CCCAAGACATTATAAATTTTTTTGCTCCACTGAAGCCTGTTAGAATCACCATGGAATATA
GCTCCAGTGGGAAGGCCACTGGAGAAGCTGATGTGCACTTCGAGACCCATGAGGATGCTG
TGGCAGCTATGCTCAAGGATCGGTCCCATGTTCACCATAGGTATATTGAATTGTTCCTGA
ATTCATGTCCAAAAGGAAAATAAGACTTACAGGGATTCCAGATAATAAGGATGAAGCAAG
AAGCATTTCATTTGCACATCTATCTTGGACATGGGATATTATTATAAAGTTCTGGTTTTT
CAGCAGCAACTGCTAGAGAAACGATTTGGGGGTTTTGAGTTAATTGCTTATAAGAAAAAT
TCCATAGTGGACTGTTTAGAAAGCAAAAGAAAAGATTCAGTTTGGGATTATGAAATAAAC
CACAAATATAATTTTTTTGTTTATAAACTGTCCAGGATCTGATTAAAAAAAAATCTAGTC
TTTATTTTATATGATTAAACAGTTTGTTTTCATAGAGCATATGTGACCCAGTGTAAAGAC
TGCATATTTTTATTCAGCACTGTCCTTTAAAATCTTTCTCCCATTTTAAAAATGATCTGT
TTGAGATTTTGTGTTTTGCCTGTGAATTAAGAGCTCTGATGTAAAACCTCTCATGGAATA
AAAATTCTGATTTATTTTAACCAAATACTCACCAAAGCAAGGAAAGATTTCAGACCTTTG
AACCATTATGGTTTGGTAGAGTAGTTTTAATTTTAGGTGTATTCCATTATTTAGATAGAG
GTAGGAATTTTAAAAAAACAATCAAAAATAAATACCACAAGTTAGTGAGTGCAAATGACA
ACAGTTTGGCAGTTTTATGTCTTTAGAGATGTTTTGCCTTTCTAAGCCTTGTGCTAAAGG
CATTTAACATTAGTGCCTGTATAATTAAGGAGGGAATTATATATAGTCTCAACTTAAAAG
TTGTCTGAACACCCTCCCCCATCACCTTTTTCTGATTTTTAGGTAAACCTTAAGGTGCGT
GCTTAGTCTCCAAACTGTGAAGTGACAGGTCGTGACAGCCTTGACCAGTAGGGATATTAA
TGGCTTCACTTGAATTTAAACCAGCTCTCGATAGGAAAGAATCTAAGTCTCCTCATCTGC
TTTTTCAGTGGGGTAGCACATCCCATATTTTAGAACAAGTAGGGGTGCCTTGCTTAAATA
AAATAGCATTTAATGTATAATCGTGTGAAGGGTTTATGGAAAAGCTGTATTTCTGTCACA
TTGTGGCAGTACCTTCTGCTTTAATATTAAACAGCTTGTTATTTAAACATTGGATCAAAA
TGGCTGGCTTCAAAATGTAGTCCTTAATAAACTAATTTTATGTGCAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACCCCTCCCCGGCCCTGGATTCCGCTTCCCCTTCGCTCGCGCTGCAGCCGCAGCCGCCTT
CAGGCCCTGCGCCGCCTCCAGAGTCCATGGCCGGGACGCGCTGGGTGCTCGGGGCGCTGC
TCCGGGGCTGCGGCTGCAACTGCAGCAGCTGCCGGCGCACCGGCGCCGCCTGCCTGCCCT
TTTATTCGACCGCCGGCTCCTTCCCGTCGGGCGTCTCGGGCCGTCGCCGCCTGCTGCTGC
TGCTCGGTGCCGCGGCGGCCGCCGCCTCGCACACGCGGGGCCTCCAGATCGGGCCTGCCC
CTGCCGGGAGGCTGGCGGGGCCTCCCCCCGCGGCCGCCTCCGCCGCCGCGGCGGCTGCCG
CCTCCTACCCGGCCCTGCGCGCCCCTCTGCTATCGCCGTCTTTGACGGCGGCCGCGGGTC
CGGCGCGGGGTTACTGCCAGGAGTCCAAAACTACCTACCTGGAAGACCTGCCACCTCTCC
CTGAGTATGAACTGCCTCCGTCCAAGTTAGGAGAGGAAGTGGATGATGTTTATCTCATTC
GAGCTCAAGGATTGCCGTGGTCGTGCACAGTGGAAGATGTGCTTAGCTTTTTCTCAGACT
GCAGAATTCGAAATGGTGAGAATGGAATCCACTTCCTTTTAAATAGAGATGGGAAACGAA
GAGGTGATGCCTTAATTGAAATGGAGTCAGAGCAGGACGTGCAAAAAGCCTTAGAAAAAC
ACCGTATGTACATGGGACAGCGGTATGTGGAAGTATATGAGATAAATAATGAAGATGTGG
ATGCCTTAATGAAGAACCTGCATGTCAAATCTACACCTATGGTGAATGATGGTGTGGTTC
GTTTGAGAGGACTTCCTTATAGTTGCAATGAAAAAGATATTGTAGACTTCTTCGCAGGGC
TGCATATAGTAGACATTACGTTTGTCATGGATTACAGAGGGAGAAGAAAAACAGGAGAAG
CCTACGTGCAGTTTGAAGAACCAGAAATGGCCAACCAAGCCCTGTTGAAACACAGGGAAG
AAATTGGTAACCGATATATAGAGATATTTCCAAGCAGAAGGAATGAAGTTCGAACACATG
TTGGTTCTCATAAGGGAAAGAAAATGGCCTCTTCTCCCACTGCTAAGTACATAACTGAGC
CAGAAATGGCCTTTGAAGAAGAAGTAAATGAGGATGTCCGACCCATGACAGCTTTTGAAA
GTGAAAAGGAAATAGAATTGCCTAAGGAGATGTCAGAAAAGCTTCCAGAGGCTGTTGATT
TTGGAACTACATCTTCATTACATTTTGTCCACATGAGAGGATTGCCTTTCCAAGCCAATG
CCCAAGACATTATAAATTTTTTTGCTCCACTGAAGCCTGTTAGAATCACCATGGAATATA
GCTCCAGTGGGAAGGCCACTGGAGAAGCTGATGTGCACTTCGAGACCCATGAGGATGCTG
TGGCAGCTATGCTCAAGGATCGGTCCCATGTTCACCATAGGTATATTGAATTGTTCCTGA
ATTCATGTCCAAAAGGAAAATAAGACTTACAGGGATTCCAGATAATAAGGATGAAGCAAG
AAGCATTTCATTTGCACATCTATCTTGGACATGGGATATTATTATAAAGTTCTGGTTTTT
CAGCAGCAACTGCTAGAGAAACGATTTGGGGGTTTTGAGTTAATTGCTTATAAGAAAAAT
TCCATAGTGGACTGTTTAGAAAGCAAAAGAAAAGATTCAGTTTGGGATTATGAAATAAAC
CACAAATATAATTTTTTTGTTTATAAACTGTCCAGGATCTGATTAAAAAAAAATCTAGTC
TTTATTTTATATGATTAAACAGTTTGTTTTCATAGAGCATATGTGACCCAGTGTAAAGAC
TGCATATTTTTATTCAGCACTGTCCTTTAAAATCTTTCTCCCATTTTAAAAATGATCTGT
TTGAGATTTTGTGTTTTGCCTGTGAATTAAGAGCTCTGATGTAAAACCTCTCATGGAATA
AAAATTCTGATTTATTTTAACCAAATACTCACCAAAGCAAGGAAAGATTTCAGACCTTTG
AACCATTATGGTTTGGTAGAGTAGTTTTAATTTTAGGTGTATTCCATTATTTAGATAGAG
GTAGGAATTTTAAAAAAACAATCAAAAATAAATACCACAAGTTAGTGAGTGCAAATGACA
ACAGTTTGGCAGTTTTATGTCTTTAGAGATGTTTTGCCTTTCTAAGCCTTGTGCTAAAGG
CATTTAACATTAGTGCCTGTATAATTAAGGAGGGAATTATATATAGTCTCAACTTAAAAG
TTGTCTGAACACCCTCCCCCATCACCTTTTTCTGATTTTTAGGTAAACCTTAAGGTGCGT
GCTTAGTCTCCAAACTGTGAAGTGACAGGTCGTGACAGCCTTGACCAGTAGGGATATTAA
TGGCTTCACTTGAATTTAAACCAGCTCTCGATAGGAAAGAATCTAAGTCTCCTCATCTGC
TTTTTCAGTGGGGTAGCACATCCCATATTTTAGAACAAGTAGGGGTGCCTTGCTTAAATA
AAATAGCATTTAATGTATAATCGTGTGAAGGGTTTATGGAAAAGCTGTATTTCTGTCACA
TTGTGGCAGTACCTTCTGCTTTAATATTAAACAGCTTGTTATTTAAACATTGGATCAAAA
TGGCTGGCTTCAAAATGTAGTCCTTAATAAACTAATTTTATGTGCAAAAAAAAAAAAAAA |
|
gi|57095604|ref|XP_532402.1| |
Protein identifier
|
gi|57095604|ref|XP_532402.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-209, gnl|bosTau2|chr6 (48493990-48493782) |
|
1-209, gnl|dasNov1|scaffold_1168 (193549-193234) |
|
1-209, gnl|hg17|chr4 (72070454-72070780) |
|
1-209, gnl|Hg17|chr4 (72070665-72070457) |
|
1-209, gnl|loxAfr1|scaffold_3958 (83876-84188) |
|
1-209, gnl|mm7|chr5 (88616184-88616495) |
|
1-209, gnl|Mm7|chr5 (88616392-88616187) |
|
1-209, gnl|monDom2|scaffold_32 (16305621-16305929) |
|
1-209, gnl|oryCun1|scaffold_175898 (83033-83349) |
|
1-209, gnl|panTro1|chr3_random (50657581-50657908) |
|
1-209, gnl|rheMac2|chr5 (58795840-58795520) |
|
1-209, gnl|rn3|chr14 (20992344-20992033) |
| |
|
539-1070, gnl|bosTau2|chr28 (8524108-8524643) |
|
539-1070, gnl|Hg17|chr10 (43203301-43202766) |
|
539-1070, gnl|Mm7|chr6 (117949255-117949790) |
| |
|
1280-1504, gnl|bosTau2|chr28 (8524934-8525158) |
|
1280-1504, gnl|Hg17|chr10 (43202475-43202251) |
|
1280-1504, gnl|Mm7|chr6 (117950081-117950305) |
| |
|
1548-2299, gnl|bosTau2|chr6 (48476594-48475878) |
|
1548-2299, gnl|Hg17|chr4 (72051615-72050911) |
|
1548-2299, gnl|Mm7|chr5 (88600920-88600313) |
| |
|
1604-1724, gnl|bosTau2|chr5 (63273820-63273698) |
|
1604-1724, gnl|Hg17|chr4 (72051565-72051445) |
| |
|
2358-2698, gnl|bosTau2|chr3 (25873574-25873233) |
|
2358-2698, gnl|Hg17|chr4 (72050811-72050526) |
|
2358-2698, gnl|Mm7|chr5 (88600255-88599926) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-209, gnl|bosTau2|chr6 (48493990-48493782) |
|
1-209, gnl|dasNov1|scaffold_1168 (193549-193234) |
|
1-209, gnl|hg17|chr4 (72070454-72070780) |
|
1-209, gnl|Hg17|chr4 (72070665-72070457) |
|
1-209, gnl|loxAfr1|scaffold_3958 (83876-84188) |
|
1-209, gnl|mm7|chr5 (88616184-88616495) |
|
1-209, gnl|Mm7|chr5 (88616392-88616187) |
|
1-209, gnl|monDom2|scaffold_32 (16305621-16305929) |
|
1-209, gnl|oryCun1|scaffold_175898 (83033-83349) |
|
1-209, gnl|panTro1|chr3_random (50657581-50657908) |
|
1-209, gnl|rheMac2|chr5 (58795840-58795520) |
|
1-209, gnl|rn3|chr14 (20992344-20992033) |
| |
|
539-1070, gnl|bosTau2|chr28 (8524108-8524643) |
|
539-1070, gnl|Hg17|chr10 (43203301-43202766) |
|
539-1070, gnl|Mm7|chr6 (117949255-117949790) |
| |
|
1280-1504, gnl|bosTau2|chr28 (8524934-8525158) |
|
1280-1504, gnl|Hg17|chr10 (43202475-43202251) |
|
1280-1504, gnl|Mm7|chr6 (117950081-117950305) |
| |
|
1548-2299, gnl|bosTau2|chr6 (48476594-48475878) |
|
1548-2299, gnl|Hg17|chr4 (72051615-72050911) |
|
1548-2299, gnl|Mm7|chr5 (88600920-88600313) |
| |
|
1604-1724, gnl|bosTau2|chr5 (63273820-63273698) |
|
1604-1724, gnl|Hg17|chr4 (72051565-72051445) |
| |
|
2358-2698, gnl|bosTau2|chr3 (25873574-25873233) |
|
2358-2698, gnl|Hg17|chr4 (72050811-72050526) |
|
2358-2698, gnl|Mm7|chr5 (88600255-88599926) |
|
hea (0.408998) |
|
tra (0.369276) |
|
nep (0.36785) |
|
gul (0.355177) |
|
fty (0.351679) |
|
vin (0.332557) |
|
sme (0.305437) |
|
lun (0.300978) |
|
fat (0.294855) |
|
ret (0.257467) |
|
cbe (0.239234) |
|
pgl (0.236967) |
|
mgp (0.230681) |
|
ece (0.229305) |
|
spc (0.226732) |
|
eje (0.197668) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
mgm (0.180343) |
|
rec (0.17307) |
|
eye (0.170503) |
|
mga (0.160205) |
|
tbr (0.154178) |
|
pty (0.142714) |
|
ste (0.135208) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
kid (0.129735) |
|
ova (0.129132) |
|
sug (0.127291) |
|
thg (0.126791) |
|
bla (0.124347) |
|
cbl (0.114797) |
|
jca (0.11396) |
|
hea (0.408998) |
|
tra (0.369276) |
|
nep (0.36785) |
|
gul (0.355177) |
|
fty (0.351679) |
|
vin (0.332557) |
|
sme (0.305437) |
|
lun (0.300978) |
|
fat (0.294855) |
|
ret (0.257467) |
|
cbe (0.239234) |
|
pgl (0.236967) |
|
mgp (0.230681) |
|
ece (0.229305) |
|
spc (0.226732) |
|
eje (0.197668) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
mgm (0.180343) |
|
rec (0.17307) |
|
eye (0.170503) |
|
mga (0.160205) |
|
tbr (0.154178) |
|
pty (0.142714) |
|
ste (0.135208) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
kid (0.129735) |
|
ova (0.129132) |
|
sug (0.127291) |
|
thg (0.126791) |
|
bla (0.124347) |
|
cbl (0.114797) |
|
jca (0.11396) |
