Non-Coding RNA Search

Ss1.1-Pig4-TMW8041J07.3

Sequence:


               
               GACTCTGCCCGGTCTCCTATCATTGGCTCCTGTGGCTCTCAGGAGCAGGCACTGTTAATA
GATCTTACAGGCAACAGTTGCCGAAGGACCCGGAGTGGTGCTGGATGGAAGCGGGTCCTG
CGTTCGCTCTGTCATTCCCGGACCCGGGTGCCACTGCTGGCAGCCATCTACTTTCTAATG
GTTCATGTCCTCCTGGTTCTCTGTTTCACGGGCCATCTATAAACTTAGTTCTCACCTTTT
GGACCACTCCTCTCAGAACTTGGAATTCCTTCACCTCTAACATCAAAACCATCAATTCCA
ATGGAACAGTCTTCCCACTTACAGGTCCTCTCTCCCACTCTCCACAGAAAGTGCCTGCAG
AAACAGAGGTGGATATGAGCACAGGTCAGAGCTGCAGGGACCAGCGAGTCTACTTTCTCG
TACTGCCCAGGGCCTGACACTTCTGCATCATCTGAAGAGGCCCCACAGTTGGTTTGGAGC
CTAGTCTTTGTTCAGATTTTGCAGGGCCCTGATCTTCTATGGTCCTGTAAGGGATGCTGA
GGAATGTCTCAGCCAGGAGCATGGTTCCGACAAACCTCATAATCCAAAGTCCAGTATCGT
TTTGATTGATACTTTCTTTGCCTCATGTACCTTATATTTTCTCCCACTTCAGAGGGAAGG
TGGACCTGCCATGAGCAATGGCAGGGGGCAATGTTCTAGGGAACATTGTCTCGTAGGATA
TCTAATTAGGTCTCTTGCAAAATAGGGTGGGAGTGGAAGAACTCCCCCGGAGAATGTAAC
TGTTGGATCACAGGGGAGGACAGCCTGTCCTTCCCTTGGCTGTTCAGACATAACTGGAGT
GAGGTTCGTGGCCCTGGATTATAAGGGGAGGGTCCCATTGCTTACCCCTTGATCACATGT
GTACCGAGGTATTCAGTGGCCTGTGTCTTTCCTTTCACTGCATGACAGGAGGCACTGGCT
AGGGATAGTGGGATACAATTCTTGTCATTCCTGGATGAGCCTCAAATGTGGGCCAGAAGC
CACTACACTAGGACCTAGTCGTAGGCGAGGTGCTGACTCCCAGCCAGGAAGGTCTCACTG
GTCTGACAGCCACTCCTAGCCTCTTGAAGTACAAAGCTGCTTTGCTGTTGGTGACAGTTA
TTCCAGTTTCTTGGTGCATGTAGTCACCTGCCCTCTTTGGTAACAGCTGAGGAAAACAGA
GACTATAGAGAAGACAAAAATATTTAAATCCAAGCCTGAGAATGACAGCTGGGTTTGAAT
TCCTTGTGTGCCTATCCCCCTCCCCCACCCTTAACCTGCTGGTTATTTTCTCATTTTGCA
CATGATGTGTTCCCTGCCTGCTCTCACCACCCAAAGAGGAGAGAAAACTGGTAGACGGAC
TGATCTGCTCTAATCCTTTGTTCTGTGGTGGCCAAATATTGGTCACAGCAACCCAGGAAC
TTTCCTGAACTGTAAAATAATAAAATTATTTTCAGAATGAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTCTGCCCGGTCTCCTATCATTGGCTCCTGTGGCTCTCAGGAGCAGGCACTGTTAATA
GATCTTACAGGCAACAGTTGCCGAAGGACCCGGAGTGGTGCTGGATGGAAGCGGGTCCTG
CGTTCGCTCTGTCATTCCCGGACCCGGGTGCCACTGCTGGCAGCCATCTACTTTCTAATG
GTTCATGTCCTCCTGGTTCTCTGTTTCACGGGCCATCTATAAACTTAGTTCTCACCTTTT
GGACCACTCCTCTCAGAACTTGGAATTCCTTCACCTCTAACATCAAAACCATCAATTCCA
ATGGAACAGTCTTCCCACTTACAGGTCCTCTCTCCCACTCTCCACAGAAAGTGCCTGCAG
AAACAGAGGTGGATATGAGCACAGGTCAGAGCTGCAGGGACCAGCGAGTCTACTTTCTCG
TACTGCCCAGGGCCTGACACTTCTGCATCATCTGAAGAGGCCCCACAGTTGGTTTGGAGC
CTAGTCTTTGTTCAGATTTTGCAGGGCCCTGATCTTCTATGGTCCTGTAAGGGATGCTGA
GGAATGTCTCAGCCAGGAGCATGGTTCCGACAAACCTCATAATCCAAAGTCCAGTATCGT
TTTGATTGATACTTTCTTTGCCTCATGTACCTTATATTTTCTCCCACTTCAGAGGGAAGG
TGGACCTGCCATGAGCAATGGCAGGGGGCAATGTTCTAGGGAACATTGTCTCGTAGGATA
TCTAATTAGGTCTCTTGCAAAATAGGGTGGGAGTGGAAGAACTCCCCCGGAGAATGTAAC
TGTTGGATCACAGGGGAGGACAGCCTGTCCTTCCCTTGGCTGTTCAGACATAACTGGAGT
GAGGTTCGTGGCCCTGGATTATAAGGGGAGGGTCCCATTGCTTACCCCTTGATCACATGT
GTACCGAGGTATTCAGTGGCCTGTGTCTTTCCTTTCACTGCATGACAGGAGGCACTGGCT
AGGGATAGTGGGATACAATTCTTGTCATTCCTGGATGAGCCTCAAATGTGGGCCAGAAGC
CACTACACTAGGACCTAGTCGTAGGCGAGGTGCTGACTCCCAGCCAGGAAGGTCTCACTG
GTCTGACAGCCACTCCTAGCCTCTTGAAGTACAAAGCTGCTTTGCTGTTGGTGACAGTTA
TTCCAGTTTCTTGGTGCATGTAGTCACCTGCCCTCTTTGGTAACAGCTGAGGAAAACAGA
GACTATAGAGAAGACAAAAATATTTAAATCCAAGCCTGAGAATGACAGCTGGGTTTGAAT
TCCTTGTGTGCCTATCCCCCTCCCCCACCCTTAACCTGCTGGTTATTTTCTCATTTTGCA
CATGATGTGTTCCCTGCCTGCTCTCACCACCCAAAGAGGAGAGAAAACTGGTAGACGGAC
TGATCTGCTCTAATCCTTTGTTCTGTGGTGGCCAAATATTGGTCACAGCAACCCAGGAAC
TTTCCTGAACTGTAAAATAATAAAATTATTTTCAGAATGAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57109560|ref|XP_535756.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57109560|ref|XP_535756.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               444-596, + strand, RNAz p=0.922192

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               444-596, + strand, RNAz p=0.922192

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               87-1482, gnl|bosTau2|chr1 (40602453-40601050)
               

               
               87-1482, gnl|Hg17|chr3 (122866152-122864737)
               

               
               87-1482, gnl|Mm7|chr16 (36640201-36641462)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               87-1482, gnl|bosTau2|chr1 (40602453-40601050)
               

               
               87-1482, gnl|Hg17|chr3 (122866152-122864737)
               

               
               87-1482, gnl|Mm7|chr16 (36640201-36641462)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               clu (0.478583)
               

               
               fhi (0.339155)
               

               
               cty (0.31224)
               

               
               hlv (0.278513)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.478583)
               

               
               fhi (0.339155)
               

               
               cty (0.31224)
               

               
               hlv (0.278513)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)

	87-1482, gnl\|bosTau2\|chr1 (40602453-40601050)
	87-1482, gnl\|Hg17\|chr3 (122866152-122864737)
	87-1482, gnl\|Mm7\|chr16 (36640201-36641462)

	clu (0.478583)
	fhi (0.339155)
	cty (0.31224)
	hlv (0.278513)
	fbs (0.175346)
	mcp (0.170648)
	lin (0.145603)
	hyp (0.142837)
	lnt (0.142308)
	nmm (0.132802)
	ute (0.132784)
	ova (0.129132)
	bla (0.124347)
	cly (0.120642)
	eru (0.120048)
	cbl (0.114797)