Non-Coding RNA Search

Ss1.1-Pig4-TMW8041J08.3

Sequence:


               
               GAGGGCTGCTCAGAAGCCACGAGGAAAAGTGGGTCTCCCTCAAGCTTCTCACAGACCAGG
AGCTCTGTTACCTCCAAGAGCTATGTTCTTTCTGTGCTCAGTGGATACCTTTGACCCTGT
CCTCCACTCTACAAAGGAAGCAGTCTTCTCAGAGTGTTTTAAATGGAGGATGTCCTTTGA
CTTGGGAAGTGTCAGGCTCTTTGAAGCAAAATCCTCACGTTAGGTCACACTGGTAGGAGA
TGGGTACTGAGTGCTCAGGCCTTATAAGGACATGTCATGTGGATTAGCATAGCCTAGTGG
TTTAGTGCATGGCCTCTGAGACCTAGATTCAAGTCCTGACATCATAAGAAGTAACATAAC
TTACATTATTTAACCATCATGAGCCTAGTTTCCATATCTGTAAAATAAAATGATACTGAT
CTCAGAGATGTCAGGGTTTAGGGGAGCCTGTGAGTGAGCTTGGCACACGGAGGTTTCAGG
GTGACCGCCCTCGGGAAAGGTGTAGGACAAACCGGAGAGGGGAAAGTGTGGAGAACTGAG
GCTGCGCTGCAGAAGCTCGTGGTTGCTCAGTGGCTTAGCTTTTGCCTACTATTGTTTGCT
TCCATTGCTGTTCTTTTACTCTATCTTGTCTGTATCTTCTGGCTCCCAAAGTTTCTGAGT
GCCATGACACCATGTGTCTCTGATTCTCTTGACTTTTCTTTAGATTCTAGAGTGTGGGAT
CTGGTCCAGCTCCTCTTTCTATACCAGGCTGCAGAAGTTTCCAGCCCGCCCTTGGACTGG
CTGCCCTTGGGTGACAGGCTCATCTTGGTTCTGAAAGCTGCAGTCAGGAAGGAAGGTCCT
AGGAGCCCTGCGCAGGAGCTGCGGGCCTGGTAGACTCACTTGAGAATGGCCAAATGGCGG
CACAGTGTGGCGTTTCCATTACTGCCAGGAGAAGAAGAATCTGTTTCTCCTGGGTCTGGG
TTCCTTGAGAGACTTCTGCTTCATCGGCTCTGTTGTAGGCCAGAGCTCATGGTCTCTTGC
GTAAAGGGCCTAGAAGGTGCTGTTTCTGTATCTTGCAAAAGGAAGTTGTTACTTTTTTGG
GTGTCATTCCTTCTTTCTCGCCCTGCTCCACAGTTCTTTTTAAATATGTAACTCTGGCCA
TAATCCTATACACATATACACAGTGACGCTTGTCAACTTGGTCAAATTGCCTCTTCAATT
ATTTCACCCTTTAGGACCCACCATCCACTAAAGAATGCAGAGAGATGCAGTCAAATCAGA
GAGGCCTCAAAGCACTGTGCTGCAATGCTCTTAAGATTGCCAGGTTACATTTCAAATAAA
ATATCTGGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGCTGCTCAGAAGCCACGAGGAAAAGTGGGTCTCCCTCAAGCTTCTCACAGACCAGG
AGCTCTGTTACCTCCAAGAGCTATGTTCTTTCTGTGCTCAGTGGATACCTTTGACCCTGT
CCTCCACTCTACAAAGGAAGCAGTCTTCTCAGAGTGTTTTAAATGGAGGATGTCCTTTGA
CTTGGGAAGTGTCAGGCTCTTTGAAGCAAAATCCTCACGTTAGGTCACACTGGTAGGAGA
TGGGTACTGAGTGCTCAGGCCTTATAAGGACATGTCATGTGGATTAGCATAGCCTAGTGG
TTTAGTGCATGGCCTCTGAGACCTAGATTCAAGTCCTGACATCATAAGAAGTAACATAAC
TTACATTATTTAACCATCATGAGCCTAGTTTCCATATCTGTAAAATAAAATGATACTGAT
CTCAGAGATGTCAGGGTTTAGGGGAGCCTGTGAGTGAGCTTGGCACACGGAGGTTTCAGG
GTGACCGCCCTCGGGAAAGGTGTAGGACAAACCGGAGAGGGGAAAGTGTGGAGAACTGAG
GCTGCGCTGCAGAAGCTCGTGGTTGCTCAGTGGCTTAGCTTTTGCCTACTATTGTTTGCT
TCCATTGCTGTTCTTTTACTCTATCTTGTCTGTATCTTCTGGCTCCCAAAGTTTCTGAGT
GCCATGACACCATGTGTCTCTGATTCTCTTGACTTTTCTTTAGATTCTAGAGTGTGGGAT
CTGGTCCAGCTCCTCTTTCTATACCAGGCTGCAGAAGTTTCCAGCCCGCCCTTGGACTGG
CTGCCCTTGGGTGACAGGCTCATCTTGGTTCTGAAAGCTGCAGTCAGGAAGGAAGGTCCT
AGGAGCCCTGCGCAGGAGCTGCGGGCCTGGTAGACTCACTTGAGAATGGCCAAATGGCGG
CACAGTGTGGCGTTTCCATTACTGCCAGGAGAAGAAGAATCTGTTTCTCCTGGGTCTGGG
TTCCTTGAGAGACTTCTGCTTCATCGGCTCTGTTGTAGGCCAGAGCTCATGGTCTCTTGC
GTAAAGGGCCTAGAAGGTGCTGTTTCTGTATCTTGCAAAAGGAAGTTGTTACTTTTTTGG
GTGTCATTCCTTCTTTCTCGCCCTGCTCCACAGTTCTTTTTAAATATGTAACTCTGGCCA
TAATCCTATACACATATACACAGTGACGCTTGTCAACTTGGTCAAATTGCCTCTTCAATT
ATTTCACCCTTTAGGACCCACCATCCACTAAAGAATGCAGAGAGATGCAGTCAAATCAGA
GAGGCCTCAAAGCACTGTGCTGCAATGCTCTTAAGATTGCCAGGTTACATTTCAAATAAA
ATATCTGGTAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-687, gnl|bosTau2|chr4 (65257593-65256910)
               


               
               731-1332, gnl|bosTau2|chr4 (65256661-65256069)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-687, gnl|bosTau2|chr4 (65257593-65256910)
               


               
               731-1332, gnl|bosTau2|chr4 (65256661-65256069)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

	1-687, gnl\|bosTau2\|chr4 (65257593-65256910)

	731-1332, gnl\|bosTau2\|chr4 (65256661-65256069)