Non-Coding RNA Search

Ss1.1-Pig4-TMW8041J09.3

Sequence:


               
               CGTTTTGCTACCACCAAGGAAATTCCATTACCACAAATAGGATCCCTATTTCTAGGTTGT
CTCCACTGCTCAGCTGTTGGTCCACTAGAGCAGTGCTTCATTCACCAAATTATAACAAAT
TCTCTATAACGAAAACTCCTCTTTTTAGCCCTTCCCTATAATCATCGCTCTGACTTGACA
GTGTGTATTTTGCCAGTGGAAAGAGGGAGAATTGAGCTGAGTGACAATGGTTTCTCAAGG
GTCAATTGTTATAGCTTCTCCAAGCCTTCTTTCTCCTGCTCTCACACATTCCAAGCTCCT
TTGCCAAAAAGGACATCCCCTAAACAGCATAATAAGATCTAGACTAAAGCACAAAACAGG
AAAGGTATGAAGCATGTGTGTTCCCTCAAATGCTAGGGGTTTTTACTGTAGACTCAGTAT
TTGGCATGACCAAGGGGTTGGCTTCATAGCTAAATCCTGTACATTGAGGCAATCGTACAT
CATGGCAGAACCATGGTAACATTTTTGTATGATCGGACTTGAATCAGCATCTCTAAGAAG
CCAGATGGACTCTTTATTTAAACACTATGCATGAAAAGCAAGAAGCTGAGAGCCGACAGC
TCAAGTACCTTGTAGGAGGTCCTTCCTAGACCTTCTAGATTTAAAGTAACTGGCTGGTCT
CTTGATTTCAAGCCTCAGATCTTGTGCCCAAGATCATGTGATCGACCAGGGTTTTAGAAC
ATGTCTGATGTGGGGCGATAATGCATTTAATGAGGAATTTTACCTCATTAAAAAGACCAT
GGCAGCTCAGTCTCCTTACATGTAGCGATAACAAGCTTTGGAAGGCCATGGTCTGAGAAC
AAGTCCATTTAGGAAATAATTTCTTGGCTTTGGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTTTTGCTACCACCAAGGAAATTCCATTACCACAAATAGGATCCCTATTTCTAGGTTGT
CTCCACTGCTCAGCTGTTGGTCCACTAGAGCAGTGCTTCATTCACCAAATTATAACAAAT
TCTCTATAACGAAAACTCCTCTTTTTAGCCCTTCCCTATAATCATCGCTCTGACTTGACA
GTGTGTATTTTGCCAGTGGAAAGAGGGAGAATTGAGCTGAGTGACAATGGTTTCTCAAGG
GTCAATTGTTATAGCTTCTCCAAGCCTTCTTTCTCCTGCTCTCACACATTCCAAGCTCCT
TTGCCAAAAAGGACATCCCCTAAACAGCATAATAAGATCTAGACTAAAGCACAAAACAGG
AAAGGTATGAAGCATGTGTGTTCCCTCAAATGCTAGGGGTTTTTACTGTAGACTCAGTAT
TTGGCATGACCAAGGGGTTGGCTTCATAGCTAAATCCTGTACATTGAGGCAATCGTACAT
CATGGCAGAACCATGGTAACATTTTTGTATGATCGGACTTGAATCAGCATCTCTAAGAAG
CCAGATGGACTCTTTATTTAAACACTATGCATGAAAAGCAAGAAGCTGAGAGCCGACAGC
TCAAGTACCTTGTAGGAGGTCCTTCCTAGACCTTCTAGATTTAAAGTAACTGGCTGGTCT
CTTGATTTCAAGCCTCAGATCTTGTGCCCAAGATCATGTGATCGACCAGGGTTTTAGAAC
ATGTCTGATGTGGGGCGATAATGCATTTAATGAGGAATTTTACCTCATTAAAAAGACCAT
GGCAGCTCAGTCTCCTTACATGTAGCGATAACAAGCTTTGGAAGGCCATGGTCTGAGAAC
AAGTCCATTTAGGAAATAATTTCTTGGCTTTGGTGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               356-472, - strand, RNAz p=0.985111
               

               
               666-861, + strand, RNAz p=0.999781

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               356-472, - strand, RNAz p=0.985111
               

               
               666-861, + strand, RNAz p=0.999781

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               242-387, - strand, RNAmicro p=0.955765

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               242-387, - strand, RNAmicro p=0.955765

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               2-876, gnl|bosTau2|chr4 (20166661-20167542)
               

               
               2-876, gnl|Hg17|chr7 (107173895-107173059)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-876, gnl|bosTau2|chr4 (20166661-20167542)
               

               
               2-876, gnl|Hg17|chr7 (107173895-107173059)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ski (0.146735)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)

	356-472, - strand, RNAz p=0.985111
	666-861, + strand, RNAz p=0.999781

	2-876, gnl\|bosTau2\|chr4 (20166661-20167542)
	2-876, gnl\|Hg17\|chr7 (107173895-107173059)