Ss1.1-Pig4-TMW8041J11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGCAAGAAGAGACTGATGGAGGACACTGAGGACTGGCGTCCAAGGACTGGAACGACTC AGTCTCGCTCTTTCCGAATCCTCGCCCAAATCACCGGGACTGAACATCTGAAAGAATCTG AAACTGACAATACAAAGAAGGCAAACACCCAAGAGGCTTCCCAGCCGTCAGCTCCATCAG CAGTGGGAGCTCAGAGCACAGCCGAGAGACCAGGAAGCCCAGCCTTTGCTAGACCCGGGG TAGCAGGACTCACCACAGCTGCCGCCTTCAAGCCAGGAGGGTCCCCCAGCGGGATCAAGT CACCAAGCTGGCAACGGCCGAACCAAGCAGCACCTTCCACCGGAAGAGTCACCAACAGTG GGACACCCACAGGAGCCAGCGCACCAGCCACCTCAGCCAGAGGGCAGCCCCAGCCCAGTA ATGAGGACACTTTAGTGCAAAGGGCTGAGCACATTCCTGCAGGGAAACGAACGCCGATGT GCGCCCACTGCAACCAGGTCATCAGGGGACCATTCCTAGTGGCACTGGGGAAATCTTGGC ACCCAGAAGAATTTAACTGTGCTCACTGCAAAAATACGATGGCCTACATTGGATTTGTAG AGGAACAGGGAGCCTTGTACTGTGAGCTCTGCTACGAGAAATTCTTTGCTCCTGAATGCG GTCGTTGCCAAAGGAAGATCCTTGGAGAAGTCATCAATGCTTTGAAACAAACCTGGCATG TTTCCTGTTTTGTGTGTGTGGCCTGTGGAAAACCTATTCGCAATAATGTGTTTCACTTGG AGGATGGTGAGCCTTACTGTGAGACTGATTATTATGCCCTCTTTGGTACTATATGCCATG GATGTGAATTTCCCATAGAGGCTGGCGACATGTTCCTGGAAGCTCTGGGCTATACCTGGC ATGACACTTGCTTTGTATGCTCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGCAAGAAGAGACTGATGGAGGACACTGAGGACTGGCGTCCAAGGACTGGAACGACTC AGTCTCGCTCTTTCCGAATCCTCGCCCAAATCACCGGGACTGAACATCTGAAAGAATCTG AAACTGACAATACAAAGAAGGCAAACACCCAAGAGGCTTCCCAGCCGTCAGCTCCATCAG CAGTGGGAGCTCAGAGCACAGCCGAGAGACCAGGAAGCCCAGCCTTTGCTAGACCCGGGG TAGCAGGACTCACCACAGCTGCCGCCTTCAAGCCAGGAGGGTCCCCCAGCGGGATCAAGT CACCAAGCTGGCAACGGCCGAACCAAGCAGCACCTTCCACCGGAAGAGTCACCAACAGTG GGACACCCACAGGAGCCAGCGCACCAGCCACCTCAGCCAGAGGGCAGCCCCAGCCCAGTA ATGAGGACACTTTAGTGCAAAGGGCTGAGCACATTCCTGCAGGGAAACGAACGCCGATGT GCGCCCACTGCAACCAGGTCATCAGGGGACCATTCCTAGTGGCACTGGGGAAATCTTGGC ACCCAGAAGAATTTAACTGTGCTCACTGCAAAAATACGATGGCCTACATTGGATTTGTAG AGGAACAGGGAGCCTTGTACTGTGAGCTCTGCTACGAGAAATTCTTTGCTCCTGAATGCG GTCGTTGCCAAAGGAAGATCCTTGGAGAAGTCATCAATGCTTTGAAACAAACCTGGCATG TTTCCTGTTTTGTGTGTGTGGCCTGTGGAAAACCTATTCGCAATAATGTGTTTCACTTGG AGGATGGTGAGCCTTACTGTGAGACTGATTATTATGCCCTCTTTGGTACTATATGCCATG GATGTGAATTTCCCATAGAGGCTGGCGACATGTTCCTGGAAGCTCTGGGCTATACCTGGC ATGACACTTGCTTTGTATGCTCAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 1-108, gnl|bosTau2|chr6 (12876683-12876576) | |
| 1-108, gnl|canFam2|chr32 (20394603-20394794) | |
| 1-108, gnl|danRer3|chrNA (175384600-175384448) | |
| 1-108, gnl|dasNov1|scaffold_4959 (98306-98497) | |
| 1-108, gnl|echTel1|scaffold_314214 (62955-63148) | |
| 1-108, gnl|fr1|chrUn (118273785-118273972) | |
| 1-108, gnl|galGal2|chr4 (58777437-58777628) | |
| 1-108, gnl|hg17|chr4 (95863895-95864086) | |
| 1-108, gnl|Hg17|chr4 (95863959-95864066) | |
| 1-108, gnl|loxAfr1|scaffold_186294 (1234-1043) | |
| 1-108, gnl|mm7|chr3 (142197412-142197221) | |
| 1-108, gnl|Mm7|chr3 (142197346-142197239) | |
| 1-108, gnl|monDom2|scaffold_32 (26016847-26016670) | |
| 1-108, gnl|oryCun1|scaffold_213750 (91521-91330) | |
| 1-108, gnl|rheMac2|chr5 (87555627-87555818) | |
| 1-108, gnl|rn3|chr2 (240231557-240231366) | |
| 1-108, gnl|tetNig1|chr5 (8593529-8593701) | |
| 1-108, gnl|xenTro1|scaffold_222 (330827-331018) | |
| 148-337, gnl|bosTau2|chr6 (12842739-12842553) | |
| 148-337, gnl|Hg17|chr4 (95896338-95896525) | |
| 148-337, gnl|Mm7|chr3 (142170938-142170754) | |
| 503-687, gnl|bosTau2|chr6 (12802096-12801912) | |
| 503-687, gnl|canFam2|chr32 (20459557-20459772) | |
| 503-687, gnl|danRer3|chrUn (30880614-30880403) | |
| 503-687, gnl|dasNov1|scaffold_126069 (3682-3895) | |
| 503-687, gnl|echTel1|scaffold_74180 (2528-2314) | |
| 503-687, gnl|fr1|chrUn (118282276-118282477) | |
| 503-687, gnl|galGal2|chr4 (58817629-58817833) | |
| 503-687, gnl|hg17|chr4 (95932762-95932976) | |
| 503-687, gnl|Hg17|chr4 (95932786-95932970) | |
| 503-687, gnl|loxAfr1|scaffold_17178 (4430-4643) | |
| 503-687, gnl|mm7|chr3 (142142480-142142267) | |
| 503-687, gnl|Mm7|chr3 (142142455-142142271) | |
| 503-687, gnl|monDom2|scaffold_32 (25960021-25959810) | |
| 503-687, gnl|oryCun1|scaffold_182811 (58620-58825) | |
| 503-687, gnl|panTro1|chr3 (112220220-112220434) | |
| 503-687, gnl|rheMac2|chr5 (87622238-87622448) | |
| 503-687, gnl|rn3|chr2 (240170815-240170602) | |
| 503-687, gnl|tetNig1|chr4 (1965669-1965865) | |
| 503-687, gnl|xenTro1|scaffold_222 (366888-367104) | |
| 804-924, gnl|bosTau2|chr6 (12795079-12794959) | |
| 804-924, gnl|Hg17|chr4 (95940747-95940867) | |
| 804-924, gnl|Mm7|chr3 (142137957-142137837) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-108, gnl|bosTau2|chr6 (12876683-12876576) | |
| 1-108, gnl|canFam2|chr32 (20394603-20394794) | |
| 1-108, gnl|danRer3|chrNA (175384600-175384448) | |
| 1-108, gnl|dasNov1|scaffold_4959 (98306-98497) | |
| 1-108, gnl|echTel1|scaffold_314214 (62955-63148) | |
| 1-108, gnl|fr1|chrUn (118273785-118273972) | |
| 1-108, gnl|galGal2|chr4 (58777437-58777628) | |
| 1-108, gnl|hg17|chr4 (95863895-95864086) | |
| 1-108, gnl|Hg17|chr4 (95863959-95864066) | |
| 1-108, gnl|loxAfr1|scaffold_186294 (1234-1043) | |
| 1-108, gnl|mm7|chr3 (142197412-142197221) | |
| 1-108, gnl|Mm7|chr3 (142197346-142197239) | |
| 1-108, gnl|monDom2|scaffold_32 (26016847-26016670) | |
| 1-108, gnl|oryCun1|scaffold_213750 (91521-91330) | |
| 1-108, gnl|rheMac2|chr5 (87555627-87555818) | |
| 1-108, gnl|rn3|chr2 (240231557-240231366) | |
| 1-108, gnl|tetNig1|chr5 (8593529-8593701) | |
| 1-108, gnl|xenTro1|scaffold_222 (330827-331018) | |
| 148-337, gnl|bosTau2|chr6 (12842739-12842553) | |
| 148-337, gnl|Hg17|chr4 (95896338-95896525) | |
| 148-337, gnl|Mm7|chr3 (142170938-142170754) | |
| 503-687, gnl|bosTau2|chr6 (12802096-12801912) | |
| 503-687, gnl|canFam2|chr32 (20459557-20459772) | |
| 503-687, gnl|danRer3|chrUn (30880614-30880403) | |
| 503-687, gnl|dasNov1|scaffold_126069 (3682-3895) | |
| 503-687, gnl|echTel1|scaffold_74180 (2528-2314) | |
| 503-687, gnl|fr1|chrUn (118282276-118282477) | |
| 503-687, gnl|galGal2|chr4 (58817629-58817833) | |
| 503-687, gnl|hg17|chr4 (95932762-95932976) | |
| 503-687, gnl|Hg17|chr4 (95932786-95932970) | |
| 503-687, gnl|loxAfr1|scaffold_17178 (4430-4643) | |
| 503-687, gnl|mm7|chr3 (142142480-142142267) | |
| 503-687, gnl|Mm7|chr3 (142142455-142142271) | |
| 503-687, gnl|monDom2|scaffold_32 (25960021-25959810) | |
| 503-687, gnl|oryCun1|scaffold_182811 (58620-58825) | |
| 503-687, gnl|panTro1|chr3 (112220220-112220434) | |
| 503-687, gnl|rheMac2|chr5 (87622238-87622448) | |
| 503-687, gnl|rn3|chr2 (240170815-240170602) | |
| 503-687, gnl|tetNig1|chr4 (1965669-1965865) | |
| 503-687, gnl|xenTro1|scaffold_222 (366888-367104) | |
| 804-924, gnl|bosTau2|chr6 (12795079-12794959) | |
| 804-924, gnl|Hg17|chr4 (95940747-95940867) | |
| 804-924, gnl|Mm7|chr3 (142137957-142137837) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) |