Non-Coding RNA Search

Ss1.1-Pig4-TMW8041J12.3

Sequence:


               
               AATGTTTTAAGATATGCATAATTTAGAGTAAAAGATTTTGTGTGACAGGATCATGCCCTA
CTTTGTTGCTATCTTTTTTGTTTTCTGCACCCACAGCATGCAGAAGTTCTCAGGCCAGGG
ATCAAACCCGTGCTGCAGCAGCACCTGAGCCACAGCAGTGACAATGCTGGATCCTTACCC
GCTGAGCCACCAGGGGACTTTATGTTGCTTTCTTTTATGAACGCTGGAAGTTATTTCCTT
TACTCCTTAGATTTTAGATATTCCAATTCCAGAAGTTGATTACATTATATTATTCACTAA
ACATTTCACTAGACTCAAAATAGAAGTAGATATTTTAAACTTAAATAGTATTTTAAAGAG
AGATCTCCTTTGCATGCTCTAGATCAAAATAATCATAGTATTAAGCTATCTGAATTTATT
CTAGACATCAAGAAAAAGACAATACATAGAAAGCTGCACATTTTTAATTCACGAAGAAAT
GAATGTCTCACACTTTTATTAGAAATCAATGTTTCAAGAAGTCATACTTTGCAGACATAA
TTCTGAAAAGCATAAGTGCTATTGTCAAATCATCACAAAATGTATGAGTATTTATCTTCA
GTTTCCTTGAAAAGGAGTAAAGTTAGATTGCTTATATCAAACTATTGTTTGAACCAAGGT
TGCCATGCTGATACCTGATTCCTGGTGAGAATACCTAGATAACTATTGTTCTCACAAAAA
TAAAATCAGTTTGCCTTATATTCCAAATAATAGCCTTTTTAGAACTGTTGTTTTGTAAAT
ATATACCACATATGTTGTAAGACATTTTTCTACTAGTAGCAATCACATAGGTAGAAAGAG
TTCTGTTCTACCACAGATTAAAAAGCATTCTCTAAAAGTACACTAATTTGGCACCTTCTT
TCCATCCTGAGTTTAAATATCATACCATTGCCTGTGTGTGTGTTTATTACTAAGATGATT
TAAATATTGTCTTGTATTTTGTGTGCTATAATTGCACGATTCTAGTCCATTTATCTCTGA
ATGTGTCTCTTTTATGTTTTGGCCCCATCACTCCCATTGGAAAGGGACACACTGTAGGGC
TCAAGCATATATATATATTAATGATTTGAAACTTTGGATAAAAAACTATATCAAATAGGC
TTAGCTAATTAGAGAGGAACTATAGAAATGTTTGTTTTTAAGAGAAAGTAGATTTTCACA
TTTGATTTCTATTCAAAGTAGCATCTATGCTGTCCACACTTTTCTGTTAAAATAGACTAT
GTTCTCCTGCAATTAGCTTAACATTCCACCTTTGTTTAACCCAAAAGACTGTATCTGAAA
GATGCATTCTGAAAGTCAAAACTGTGTTCATAATAAAAATTAACTTGAAAATCAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGTTTTAAGATATGCATAATTTAGAGTAAAAGATTTTGTGTGACAGGATCATGCCCTA
CTTTGTTGCTATCTTTTTTGTTTTCTGCACCCACAGCATGCAGAAGTTCTCAGGCCAGGG
ATCAAACCCGTGCTGCAGCAGCACCTGAGCCACAGCAGTGACAATGCTGGATCCTTACCC
GCTGAGCCACCAGGGGACTTTATGTTGCTTTCTTTTATGAACGCTGGAAGTTATTTCCTT
TACTCCTTAGATTTTAGATATTCCAATTCCAGAAGTTGATTACATTATATTATTCACTAA
ACATTTCACTAGACTCAAAATAGAAGTAGATATTTTAAACTTAAATAGTATTTTAAAGAG
AGATCTCCTTTGCATGCTCTAGATCAAAATAATCATAGTATTAAGCTATCTGAATTTATT
CTAGACATCAAGAAAAAGACAATACATAGAAAGCTGCACATTTTTAATTCACGAAGAAAT
GAATGTCTCACACTTTTATTAGAAATCAATGTTTCAAGAAGTCATACTTTGCAGACATAA
TTCTGAAAAGCATAAGTGCTATTGTCAAATCATCACAAAATGTATGAGTATTTATCTTCA
GTTTCCTTGAAAAGGAGTAAAGTTAGATTGCTTATATCAAACTATTGTTTGAACCAAGGT
TGCCATGCTGATACCTGATTCCTGGTGAGAATACCTAGATAACTATTGTTCTCACAAAAA
TAAAATCAGTTTGCCTTATATTCCAAATAATAGCCTTTTTAGAACTGTTGTTTTGTAAAT
ATATACCACATATGTTGTAAGACATTTTTCTACTAGTAGCAATCACATAGGTAGAAAGAG
TTCTGTTCTACCACAGATTAAAAAGCATTCTCTAAAAGTACACTAATTTGGCACCTTCTT
TCCATCCTGAGTTTAAATATCATACCATTGCCTGTGTGTGTGTTTATTACTAAGATGATT
TAAATATTGTCTTGTATTTTGTGTGCTATAATTGCACGATTCTAGTCCATTTATCTCTGA
ATGTGTCTCTTTTATGTTTTGGCCCCATCACTCCCATTGGAAAGGGACACACTGTAGGGC
TCAAGCATATATATATATTAATGATTTGAAACTTTGGATAAAAAACTATATCAAATAGGC
TTAGCTAATTAGAGAGGAACTATAGAAATGTTTGTTTTTAAGAGAAAGTAGATTTTCACA
TTTGATTTCTATTCAAAGTAGCATCTATGCTGTCCACACTTTTCTGTTAAAATAGACTAT
GTTCTCCTGCAATTAGCTTAACATTCCACCTTTGTTTAACCCAAAAGACTGTATCTGAAA
GATGCATTCTGAAAGTCAAAACTGTGTTCATAATAAAAATTAACTTGAAAATCAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               200-733, gnl|bosTau2|chr6 (2846450-2847016)
               

               
               200-733, gnl|Hg17|chr4 (120338850-120339347)
               


               
               769-1375, gnl|bosTau2|chr6 (2847410-2848019)
               

               
               769-1375, gnl|Hg17|chr4 (120339421-120340005)
               

               
               769-1375, gnl|Mm7|chr3 (122915701-122915148)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               200-733, gnl|bosTau2|chr6 (2846450-2847016)
               

               
               200-733, gnl|Hg17|chr4 (120338850-120339347)
               


               
               769-1375, gnl|bosTau2|chr6 (2847410-2848019)
               

               
               769-1375, gnl|Hg17|chr4 (120339421-120340005)
               

               
               769-1375, gnl|Mm7|chr3 (122915701-122915148)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               aor (1.17165)
               

               
               tra (0.369276)
               

               
               gul (0.355177)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (1.17165)
               

               
               tra (0.369276)
               

               
               gul (0.355177)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)

	200-733, gnl\|bosTau2\|chr6 (2846450-2847016)
	200-733, gnl\|Hg17\|chr4 (120338850-120339347)

	769-1375, gnl\|bosTau2\|chr6 (2847410-2848019)
	769-1375, gnl\|Hg17\|chr4 (120339421-120340005)
	769-1375, gnl\|Mm7\|chr3 (122915701-122915148)

	aor (1.17165)
	tra (0.369276)
	gul (0.355177)
	sto (0.179824)
	sin (0.174948)
	rec (0.17307)
	fat (0.147427)
	ova (0.129132)
	ret (0.128733)
	bla (0.124347)