Non-Coding RNA Search

Ss1.1-Pig4-TMW8041J15.5

Sequence:


               
               CTACACCAAATACCCCAAGATGGCTTTTGTGTAGCCAAATTGACTTCAACAGTGTGCCTT
TGGGAACAGACCCACCTCCAGGACCTCACTGGGGGACATTCACATGCAGCTTCTGAGCCT
TGCACCTGGCAGCTGTACTGGCTGCCGCAGGAGTGGTGCCCACCGTGGCAGGGCTGGGGG
CCCGGGGGAAACTGCAAAGTGGGCAGTTAAGAGGGAGAATGCCCCTTCGGCTGCCCCAGC
AGGAGGTGGAGAGATGCCAGCTCACTGCAGTCTGGAAGGAAGGGGTGCCAGCACACTGGG
CCCCGGCACCAGCCTCCCCTTCTGTACCCAGATGCTCTGGCTTTGTGACAAAAGGGGCTC
TCCTGGGCTGCGTCCCCCACAGAGAAGCTCATGACTTCCAAGTTTCGCTGCCTTAGAGGC
TGCAGAGCCAGGCTAATAGCAGCTCTCCCTCCCCTCCAAGCCCTCAGGGTGCCCCTGCTC
TGGGCCGACCCGACAGCCCCAGCAGCCAGGTCTCCAAACCCCGATTAGGTGCCTTTCTGT
TTACCAGCTACTTCAATCCCAAAGTTTGAATCGCGAACACCTTACTCCCTGCCACTTTGC
CTTCTTGCTGTGTTGTGTGTATTTCTTGGTGCTTGTGACCCCAAGTGGTTCATGTTTAAA
AAGGGTTTGTGTGTGTGTATGTGTGTGCACACATGTACAGGCGTGACAGCCTTCGCTGAA
GAGTTGGGTCGTCATGTTTACCAGTAAATAAAAGTAGTGCTTTTTAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACACCAAATACCCCAAGATGGCTTTTGTGTAGCCAAATTGACTTCAACAGTGTGCCTT
TGGGAACAGACCCACCTCCAGGACCTCACTGGGGGACATTCACATGCAGCTTCTGAGCCT
TGCACCTGGCAGCTGTACTGGCTGCCGCAGGAGTGGTGCCCACCGTGGCAGGGCTGGGGG
CCCGGGGGAAACTGCAAAGTGGGCAGTTAAGAGGGAGAATGCCCCTTCGGCTGCCCCAGC
AGGAGGTGGAGAGATGCCAGCTCACTGCAGTCTGGAAGGAAGGGGTGCCAGCACACTGGG
CCCCGGCACCAGCCTCCCCTTCTGTACCCAGATGCTCTGGCTTTGTGACAAAAGGGGCTC
TCCTGGGCTGCGTCCCCCACAGAGAAGCTCATGACTTCCAAGTTTCGCTGCCTTAGAGGC
TGCAGAGCCAGGCTAATAGCAGCTCTCCCTCCCCTCCAAGCCCTCAGGGTGCCCCTGCTC
TGGGCCGACCCGACAGCCCCAGCAGCCAGGTCTCCAAACCCCGATTAGGTGCCTTTCTGT
TTACCAGCTACTTCAATCCCAAAGTTTGAATCGCGAACACCTTACTCCCTGCCACTTTGC
CTTCTTGCTGTGTTGTGTGTATTTCTTGGTGCTTGTGACCCCAAGTGGTTCATGTTTAAA
AAGGGTTTGTGTGTGTGTATGTGTGTGCACACATGTACAGGCGTGACAGCCTTCGCTGAA
GAGTTGGGTCGTCATGTTTACCAGTAAATAAAAGTAGTGCTTTTTAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               187-296, - strand, RNAz p=0.870213
               

               
               416-571, - strand, RNAz p=0.899249
               

               
               611-764, + strand, RNAz p=0.998479

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               187-296, - strand, RNAz p=0.870213
               

               
               416-571, - strand, RNAz p=0.899249
               

               
               611-764, + strand, RNAz p=0.998479

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-764, gnl|bosTau2|chr19 (46931018-46931793)
               

               
               3-764, gnl|Hg17|chr17 (75375225-75375955)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-764, gnl|bosTau2|chr19 (46931018-46931793)
               

               
               3-764, gnl|Hg17|chr17 (75375225-75375955)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nbm (0.0993246)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.0993246)

	187-296, - strand, RNAz p=0.870213
	416-571, - strand, RNAz p=0.899249
	611-764, + strand, RNAz p=0.998479

	3-764, gnl\|bosTau2\|chr19 (46931018-46931793)
	3-764, gnl\|Hg17\|chr17 (75375225-75375955)