Non-Coding RNA Search

Ss1.1-Pig4-TMW8041J19.3

Sequence:


               
               ACCACCCTGACCTCCAGTCTCGCTCCCCCAGCCACGGCCACCCCTGATTCAAACTCTGTG
CCCACTGGCCAGGCCACCCCTTCCAAGGGGCCTGGCGTCGCTGCCACCTCCCCGCCCCCA
GCCGCAGCCCCCAAGGTCGCTCCCCTCGTTGACCTGAGCGACACCCCAACCTCAGCCCCC
GCGGCCAGCAATTTGTCCTCTAGCATCAGGCTCCCCTCTGGCAGTGACCACGTCATGCTC
AAGTCCCTGGACGCAGGCGAGGCCTACGAGGTCTACGTAGTGGCTGAGCCGGCCCCCGCC
AAGTCCAAGGCGGCTCACTTCGTGTTCAGGACCTCGGCGCAGCCCACGGCCATCCCAGCC
AACGGCAGCCCCACCTCAGGTCTGAGCACTGGCGCCATCGTGGGCATCCTTGTCGTCACC
TTCGTCCTGCTCCTGGTGGCTGTGGATGTCACCTGCTACTTCCTGAACAAGTGTGGCCTG
CTCATGTGCATTGCCGTCAACCTGTGTGGAAAAGCCTTTAAAATGGACGAAGGGAACTTC
AAGACCCCAGATATTGACCTTGCAAAGGATGTCTTTGCCGCCCTGGGCTCTCCTGCTCCC
GCCGCTGGGGCCAGTGGACAAGCCCCTGAGCTTGCTCCTTCCACTGCCGACAGCTCTGGT
CCGCCTGCACCAGCAAAGACCGAGAAGGGCCCTGTAGAAGCAAAGCCGGAGTGCCAGGAG
ACAGAAACGAAGCCAGCGCCAGCCGACGTCGAGACGGTCCCCAATGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCACCCTGACCTCCAGTCTCGCTCCCCCAGCCACGGCCACCCCTGATTCAAACTCTGTG
CCCACTGGCCAGGCCACCCCTTCCAAGGGGCCTGGCGTCGCTGCCACCTCCCCGCCCCCA
GCCGCAGCCCCCAAGGTCGCTCCCCTCGTTGACCTGAGCGACACCCCAACCTCAGCCCCC
GCGGCCAGCAATTTGTCCTCTAGCATCAGGCTCCCCTCTGGCAGTGACCACGTCATGCTC
AAGTCCCTGGACGCAGGCGAGGCCTACGAGGTCTACGTAGTGGCTGAGCCGGCCCCCGCC
AAGTCCAAGGCGGCTCACTTCGTGTTCAGGACCTCGGCGCAGCCCACGGCCATCCCAGCC
AACGGCAGCCCCACCTCAGGTCTGAGCACTGGCGCCATCGTGGGCATCCTTGTCGTCACC
TTCGTCCTGCTCCTGGTGGCTGTGGATGTCACCTGCTACTTCCTGAACAAGTGTGGCCTG
CTCATGTGCATTGCCGTCAACCTGTGTGGAAAAGCCTTTAAAATGGACGAAGGGAACTTC
AAGACCCCAGATATTGACCTTGCAAAGGATGTCTTTGCCGCCCTGGGCTCTCCTGCTCCC
GCCGCTGGGGCCAGTGGACAAGCCCCTGAGCTTGCTCCTTCCACTGCCGACAGCTCTGGT
CCGCCTGCACCAGCAAAGACCGAGAAGGGCCCTGTAGAAGCAAAGCCGGAGTGCCAGGAG
ACAGAAACGAAGCCAGCGCCAGCCGACGTCGAGACGGTCCCCAATGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6LBU8_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6LBU8_MOUSE

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-207, gnl|bosTau2|chr15 (10216512-10216718)
               

               
               1-207, gnl|Hg17|chr11 (112648989-112649195)
               

               
               1-207, gnl|Mm7|chr9 (49482770-49482570)
               


               
               350-516, gnl|bosTau2|chr15 (10213459-10213625)
               

               
               350-516, gnl|Hg17|chr11 (112646111-112646277)
               

               
               350-516, gnl|Mm7|chr9 (49485162-49484996)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-207, gnl|bosTau2|chr15 (10216512-10216718)
               

               
               1-207, gnl|Hg17|chr11 (112648989-112649195)
               

               
               1-207, gnl|Mm7|chr9 (49482770-49482570)
               


               
               350-516, gnl|bosTau2|chr15 (10213459-10213625)
               

               
               350-516, gnl|Hg17|chr11 (112646111-112646277)
               

               
               350-516, gnl|Mm7|chr9 (49485162-49484996)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               ebs (0.118301)

	1-207, gnl\|bosTau2\|chr15 (10216512-10216718)
	1-207, gnl\|Hg17\|chr11 (112648989-112649195)
	1-207, gnl\|Mm7\|chr9 (49482770-49482570)

	350-516, gnl\|bosTau2\|chr15 (10213459-10213625)
	350-516, gnl\|Hg17\|chr11 (112646111-112646277)
	350-516, gnl\|Mm7\|chr9 (49485162-49484996)