Ss1.1-Pig4-TMW8041K02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATAACTACTCGGCGTTGCTTCTACAGTGGCTAGGGGTTGAATCGGAGCTGTAGCTGCCA GCCTACGCCAGAGCCACAGCAACGCAGGATCCGAGTCGCATCTGCGACCTGCACCACAGC AACTATGACTATCCAAACAGCTCAGAGGATTATGTGCACCGTATTGGCCGAACAGCCCGT AGCACCAACAAGGGCACTGCCTACACCTTCTTCACCCCTGGGAACCTGAAGCAGGCCAGA GAGTTGATCAAAGTGCTGGAAGAGGCTAATCAGGCTATCAATCCAAAACTGATGCAGCTG GTGGACCACAGAGGAGGCGGCGGCGGAGGGGGTAAGGGAGGTCGTTCTCGATACCGGACC ACTTCTTCAGCCAACAATCCCAATCTGATGTATCAGGATGAGTGTGACCGGAGGCTTCGA GGAGTCAAAGATGGTGGCCGGAGAGACTCTGCAAGCTATCGGGATCGTGGTGAAACCGAT AGAGCCGGTTATGCTAACGGCAGTGGCTATGGAAGTCCAAATTCTGCCTTTGGAGCACAA GCAGGCCAATACACCTATGGTCAAGGCACCTATGGGGCAGCTGCTTATGGCACCAGTGGT TACACAGCCCAAGAATATGGCGCTGGTACTTATGGGGCTAGTAGCACTACCTCAACTGGG AGAAGTTCACAGAGTTCTAGCCAGCAGTTTAGTGGGATAGGCCGATCTGGGCAGCAACCA CAGCCACTGATGTCACAACAGTTTGCACAACCTCCAGGAGCTACCAACATGATAGGTTAC ATGGGGCAGACTGCCTACCAATACCCCCCTCCTCCTCCTCCCCCTCCTCCTTCACGTAAA TGAAACCACTCAAGTGGTAGTGACTTGTGCAGACTTAACTACATTTAAAGGAACGCTATC TTTACCTTTTTTTCTCTTCCCCGTTTCTTTTTCTTTTTAAATTTTTTCCCCAACCATTGT GATTTGTCTTTCATGCAGATTAGTTAGAATTCACTGCCAGGTTTCTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATAACTACTCGGCGTTGCTTCTACAGTGGCTAGGGGTTGAATCGGAGCTGTAGCTGCCA GCCTACGCCAGAGCCACAGCAACGCAGGATCCGAGTCGCATCTGCGACCTGCACCACAGC AACTATGACTATCCAAACAGCTCAGAGGATTATGTGCACCGTATTGGCCGAACAGCCCGT AGCACCAACAAGGGCACTGCCTACACCTTCTTCACCCCTGGGAACCTGAAGCAGGCCAGA GAGTTGATCAAAGTGCTGGAAGAGGCTAATCAGGCTATCAATCCAAAACTGATGCAGCTG GTGGACCACAGAGGAGGCGGCGGCGGAGGGGGTAAGGGAGGTCGTTCTCGATACCGGACC ACTTCTTCAGCCAACAATCCCAATCTGATGTATCAGGATGAGTGTGACCGGAGGCTTCGA GGAGTCAAAGATGGTGGCCGGAGAGACTCTGCAAGCTATCGGGATCGTGGTGAAACCGAT AGAGCCGGTTATGCTAACGGCAGTGGCTATGGAAGTCCAAATTCTGCCTTTGGAGCACAA GCAGGCCAATACACCTATGGTCAAGGCACCTATGGGGCAGCTGCTTATGGCACCAGTGGT TACACAGCCCAAGAATATGGCGCTGGTACTTATGGGGCTAGTAGCACTACCTCAACTGGG AGAAGTTCACAGAGTTCTAGCCAGCAGTTTAGTGGGATAGGCCGATCTGGGCAGCAACCA CAGCCACTGATGTCACAACAGTTTGCACAACCTCCAGGAGCTACCAACATGATAGGTTAC ATGGGGCAGACTGCCTACCAATACCCCCCTCCTCCTCCTCCCCCTCCTCCTTCACGTAAA TGAAACCACTCAAGTGGTAGTGACTTGTGCAGACTTAACTACATTTAAAGGAACGCTATC TTTACCTTTTTTTCTCTTCCCCGTTTCTTTTTCTTTTTAAATTTTTTCCCCAACCATTGT GATTTGTCTTTCATGCAGATTAGTTAGAATTCACTGCCAGGTTTCTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 117-217, - strand, RNAz p=0.93391 | |
| 197-314, - strand, RNAz p=0.861803 | |
| 376-655, + strand, RNAz p=0.877311 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 117-217, - strand, RNAz p=0.93391 | |
| 197-314, - strand, RNAz p=0.861803 | |
| 376-655, + strand, RNAz p=0.877311 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of CR456432, + |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 117-314, gnl|bosTau2|chr19 (42624137-42623940) | |
| 117-314, gnl|canFam2|chr9 (15429428-15429658) | |
| 117-314, gnl|danRer3|chr3 (20713880-20714107) | |
| 117-314, gnl|dasNov1|scaffold_26398 (41863-41637) | |
| 117-314, gnl|echTel1|scaffold_303041 (3740-3970) | |
| 117-314, gnl|fr1|chrUn (119966189-119966413) | |
| 117-314, gnl|galGal2|chr18 (6689311-6689541) | |
| 117-314, gnl|hg17|chr17 (59927124-59927354) | |
| 117-314, gnl|Hg17|chr17 (59927331-59927134) | |
| 117-314, gnl|loxAfr1|scaffold_7204 (53647-53417) | |
| 117-314, gnl|mm7|chr11 (106891505-106891735) | |
| 117-314, gnl|Mm7|chr11 (106891712-106891515) | |
| 117-314, gnl|monDom2|scaffold_18 (16807107-16807337) | |
| 117-314, gnl|oryCun1|scaffold_166192 (6066-5851) | |
| 117-314, gnl|panTro1|chr19_random (49348015-49348245) | |
| 117-314, gnl|rheMac2|chr16 (60045998-60046228) | |
| 117-314, gnl|rn3|chr10 (96147154-96147384) | |
| 117-314, gnl|tetNig1|chrUn_random (27211377-27211150) | |
| 117-314, gnl|xenTro1|scaffold_1145 (134545-134787) | |
| 337-1008, gnl|bosTau2|chr5 (68020884-68021554) | |
| 337-1008, gnl|Hg17|chr22 (37206946-37206252) | |
| 337-1008, gnl|Mm7|chr15 (79614650-79613983) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 117-314, gnl|bosTau2|chr19 (42624137-42623940) | |
| 117-314, gnl|canFam2|chr9 (15429428-15429658) | |
| 117-314, gnl|danRer3|chr3 (20713880-20714107) | |
| 117-314, gnl|dasNov1|scaffold_26398 (41863-41637) | |
| 117-314, gnl|echTel1|scaffold_303041 (3740-3970) | |
| 117-314, gnl|fr1|chrUn (119966189-119966413) | |
| 117-314, gnl|galGal2|chr18 (6689311-6689541) | |
| 117-314, gnl|hg17|chr17 (59927124-59927354) | |
| 117-314, gnl|Hg17|chr17 (59927331-59927134) | |
| 117-314, gnl|loxAfr1|scaffold_7204 (53647-53417) | |
| 117-314, gnl|mm7|chr11 (106891505-106891735) | |
| 117-314, gnl|Mm7|chr11 (106891712-106891515) | |
| 117-314, gnl|monDom2|scaffold_18 (16807107-16807337) | |
| 117-314, gnl|oryCun1|scaffold_166192 (6066-5851) | |
| 117-314, gnl|panTro1|chr19_random (49348015-49348245) | |
| 117-314, gnl|rheMac2|chr16 (60045998-60046228) | |
| 117-314, gnl|rn3|chr10 (96147154-96147384) | |
| 117-314, gnl|tetNig1|chrUn_random (27211377-27211150) | |
| 117-314, gnl|xenTro1|scaffold_1145 (134545-134787) | |
| 337-1008, gnl|bosTau2|chr5 (68020884-68021554) | |
| 337-1008, gnl|Hg17|chr22 (37206946-37206252) | |
| 337-1008, gnl|Mm7|chr15 (79614650-79613983) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| che (0.136314) |