Non-Coding RNA Search

Ss1.1-Pig4-TMW8041K10.3

Sequence:


               
               GGGCTCTGCTTCCATTTCCTCCCTTTCCACTTGAACTACCACCTCTTGCTCCACTGGGGC
TGGAAGAGACTTGGTAGGACTGTGGAGTTCCATAGTATCATCCCTTTGAAATTCAGCTTT
TTGGGTAACTTCATCCTCGAGGGAAACTTCAGTTATCTTTTTTGGACCGATGGTGATTTC
CGTGTCCGCAGACATGGCAAGTCCTTCGACCAGTGGTTCTTCTCTGGCCTCCTCATCGGC
ACATTGGCTGCCCTCTTGAACCCCCTCAGTCTTTGAAAGGATGGGTACAGACTCCATGGT
TACTTCTTTCTCCGTATGTTCCAGAATCTCTTCCACTTCTGCACCCTTTTCTTCCTGGCA
TTGAAAATGGGAAGGTGCTGGAGGCATCTCTTTGAGGGCAGGAACGGCCTCGCCTTCTGT
GACCTGGGATGTGGGACCAGATGCAACCGCAGCATCTTCGTGGATTTCCATGATTTTGTC
CTGCTGGATTAGAGTTGGAGCTTCAAACTCTGCTACTGGGGTGCTTCCATTGGTCTCACT
GTCTGTGAGGGTTTCAGCTGAGTCAGGAGCCATGGCCTGTCCTGGCACAGTCTCTGATTT
TACCCCAGCTGCAGTTTCAGCTTGACAAGTGGTTGTAAGCTCACGGGACTCTGCGCTCTC
TGTGCCTGGAGGAACTGGTTCCGAGCTTTCTGGGGTGGCCTGGACAATCTCCTTCCCTTG
TGGCTCGGGTTTAGTTTCTTGTACGAGTGCTTCTGACGCTCTGTCCGTCACTTCCTTCAG
ATCGAGTGCGTGAGACTCCTCTTCTGCTTCTTCCAGCTTCTCCAGGATTCTTGCTTGTCC
TTCCTGGGTGGTCTGGATGGTGCTGTCCAGCTCTCTGGTGTCGGGCAGCTGTGATTCTTC
TCTCACTTTTTCTGCAACCGCCCGCAGCACCTCTTGGGTCCGCCTCTCCTGGTCTTCCAC
GTCTGGCTCGCCGCCCTCTACCTCCTGAACCGGGGTCGCCTCCTCCGTGGTGTCTGGCGA
CTCAGTCAGCTGGGAAACAGCGGAGACCATGTCTGTGGTCTCCTCCGCTCCAGAGGCTTC
CGTGGCTTCCTCCGCAGGAAGCGCCTCCGACGTTTCTGCAGCTGTCACCGCTTCGGAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTCTGCTTCCATTTCCTCCCTTTCCACTTGAACTACCACCTCTTGCTCCACTGGGGC
TGGAAGAGACTTGGTAGGACTGTGGAGTTCCATAGTATCATCCCTTTGAAATTCAGCTTT
TTGGGTAACTTCATCCTCGAGGGAAACTTCAGTTATCTTTTTTGGACCGATGGTGATTTC
CGTGTCCGCAGACATGGCAAGTCCTTCGACCAGTGGTTCTTCTCTGGCCTCCTCATCGGC
ACATTGGCTGCCCTCTTGAACCCCCTCAGTCTTTGAAAGGATGGGTACAGACTCCATGGT
TACTTCTTTCTCCGTATGTTCCAGAATCTCTTCCACTTCTGCACCCTTTTCTTCCTGGCA
TTGAAAATGGGAAGGTGCTGGAGGCATCTCTTTGAGGGCAGGAACGGCCTCGCCTTCTGT
GACCTGGGATGTGGGACCAGATGCAACCGCAGCATCTTCGTGGATTTCCATGATTTTGTC
CTGCTGGATTAGAGTTGGAGCTTCAAACTCTGCTACTGGGGTGCTTCCATTGGTCTCACT
GTCTGTGAGGGTTTCAGCTGAGTCAGGAGCCATGGCCTGTCCTGGCACAGTCTCTGATTT
TACCCCAGCTGCAGTTTCAGCTTGACAAGTGGTTGTAAGCTCACGGGACTCTGCGCTCTC
TGTGCCTGGAGGAACTGGTTCCGAGCTTTCTGGGGTGGCCTGGACAATCTCCTTCCCTTG
TGGCTCGGGTTTAGTTTCTTGTACGAGTGCTTCTGACGCTCTGTCCGTCACTTCCTTCAG
ATCGAGTGCGTGAGACTCCTCTTCTGCTTCTTCCAGCTTCTCCAGGATTCTTGCTTGTCC
TTCCTGGGTGGTCTGGATGGTGCTGTCCAGCTCTCTGGTGTCGGGCAGCTGTGATTCTTC
TCTCACTTTTTCTGCAACCGCCCGCAGCACCTCTTGGGTCCGCCTCTCCTGGTCTTCCAC
GTCTGGCTCGCCGCCCTCTACCTCCTGAACCGGGGTCGCCTCCTCCGTGGTGTCTGGCGA
CTCAGTCAGCTGGGAAACAGCGGAGACCATGTCTGTGGTCTCCTCCGCTCCAGAGGCTTC
CGTGGCTTCCTCCGCAGGAAGCGCCTCCGACGTTTCTGCAGCTGTCACCGCTTCGGAGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1019-1114, - strand, RNAz p=0.932604

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1019-1114, - strand, RNAz p=0.932604

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1114, gnl|bosTau2|chr9 (52937100-52938195)
               

               
               4-1114, gnl|Hg17|chr6 (151765687-151764553)
               

               
               4-1114, gnl|Mm7|chr10 (5990371-5991451)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1114, gnl|bosTau2|chr9 (52937100-52938195)
               

               
               4-1114, gnl|Hg17|chr6 (151765687-151764553)
               

               
               4-1114, gnl|Mm7|chr10 (5990371-5991451)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	4-1114, gnl\|bosTau2\|chr9 (52937100-52938195)
	4-1114, gnl\|Hg17\|chr6 (151765687-151764553)
	4-1114, gnl\|Mm7\|chr10 (5990371-5991451)