Non-Coding RNA Search

Ss1.1-Pig4-TMW8041K13.5

Sequence:


               
               CGGCGCCAAAGCATGAACGGCTCGCAGACGGGCGTCACAGCCCGAGCCGCCTGGCTGAGC
TCCTGCTGCAACCAGTCGGGGGTGCCGCCGCCGCCGGCGCCGCCGGAGCCCCCCGAGGGG
CCGCGCGCCCTGCAGGCGGCGGTGCTGGGCGTGCTGTCCCTGCTCGTGCTCTGCGGGATC
CTGTTCCTGGGCGCCGGCCTCTTGCTCCGCGCCCAGGGCCTGACAGCGCTGCTGGCCCGA
GAGCTGCGCGCGTCCCGGGAGACCGAGCCCGGTGGCGCCAGCGGAGGCGACGACGACGAG
GACGACTCCTAGGCGCCCGACGCCCTTCTGAGTTGCGGGCGCGAATGCACAGATTCCCGA
GCCTCGCGTGTTCTGCCTCCCAGAGAGGTCTCCTTCCAGCCCATCGGCCGCACAGGGAAC
TCCTGCGACCTTCGATCCCTGCATGGTGCAGATGACAGCCTGGGAGAAGCTTGGATTGTG
CTGAGACCTCAGCCTGGGATCCTTGCACTCAGCTGCTGCCTCTGATTGGCTCCAACCATC
CTCCTGAAGTGCTCATGGAGTGGGTCTGGGAGGTCAGCGCTCCCGGAATGAGTGGTCCCC
GGGGCAACTGCTGTGTGTCCTGGGTACGGAAGAGGACACACCCTCCAGGATGCTCAGTAT
AGTAGATGTTGACCAGGCCCCCTGTCTGCTGGACCTCTGAGGACACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCGCCAAAGCATGAACGGCTCGCAGACGGGCGTCACAGCCCGAGCCGCCTGGCTGAGC
TCCTGCTGCAACCAGTCGGGGGTGCCGCCGCCGCCGGCGCCGCCGGAGCCCCCCGAGGGG
CCGCGCGCCCTGCAGGCGGCGGTGCTGGGCGTGCTGTCCCTGCTCGTGCTCTGCGGGATC
CTGTTCCTGGGCGCCGGCCTCTTGCTCCGCGCCCAGGGCCTGACAGCGCTGCTGGCCCGA
GAGCTGCGCGCGTCCCGGGAGACCGAGCCCGGTGGCGCCAGCGGAGGCGACGACGACGAG
GACGACTCCTAGGCGCCCGACGCCCTTCTGAGTTGCGGGCGCGAATGCACAGATTCCCGA
GCCTCGCGTGTTCTGCCTCCCAGAGAGGTCTCCTTCCAGCCCATCGGCCGCACAGGGAAC
TCCTGCGACCTTCGATCCCTGCATGGTGCAGATGACAGCCTGGGAGAAGCTTGGATTGTG
CTGAGACCTCAGCCTGGGATCCTTGCACTCAGCTGCTGCCTCTGATTGGCTCCAACCATC
CTCCTGAAGTGCTCATGGAGTGGGTCTGGGAGGTCAGCGCTCCCGGAATGAGTGGTCCCC
GGGGCAACTGCTGTGTGTCCTGGGTACGGAAGAGGACACACCCTCCAGGATGCTCAGTAT
AGTAGATGTTGACCAGGCCCCCTGTCTGCTGGACCTCTGAGGACACAA

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-297, gnl|bosTau2|chr5 (19518976-19519257)
               

               
               1-297, gnl|canFam2|chr27 (5931637-5931378)
               

               
               1-297, gnl|dasNov1|scaffold_67004 (5273-5024)
               

               
               1-297, gnl|echTel1|scaffold_222248 (4229-3978)
               

               
               1-297, gnl|hg17|chr12 (50759767-50760024)
               

               
               1-297, gnl|Hg17|chr12 (50759819-50760106)
               

               
               1-297, gnl|loxAfr1|scaffold_93603 (8944-9193)
               

               
               1-297, gnl|mm7|chr15 (101279054-101279288)
               

               
               1-297, gnl|Mm7|chr15 (101279088-101279361)
               

               
               1-297, gnl|panTro1|chr10 (51977732-51977989)
               

               
               1-297, gnl|rheMac2|chr11 (49211172-49211429)
               

               
               1-297, gnl|rn3|chr7 (140117892-140118123)
               


               
               349-696, gnl|bosTau2|chr5 (19521646-19521981)
               

               
               349-696, gnl|Hg17|chr12 (50762905-50763264)
               

               
               349-696, gnl|Mm7|chr15 (101281720-101282001)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-297, gnl|bosTau2|chr5 (19518976-19519257)
               

               
               1-297, gnl|canFam2|chr27 (5931637-5931378)
               

               
               1-297, gnl|dasNov1|scaffold_67004 (5273-5024)
               

               
               1-297, gnl|echTel1|scaffold_222248 (4229-3978)
               

               
               1-297, gnl|hg17|chr12 (50759767-50760024)
               

               
               1-297, gnl|Hg17|chr12 (50759819-50760106)
               

               
               1-297, gnl|loxAfr1|scaffold_93603 (8944-9193)
               

               
               1-297, gnl|mm7|chr15 (101279054-101279288)
               

               
               1-297, gnl|Mm7|chr15 (101279088-101279361)
               

               
               1-297, gnl|panTro1|chr10 (51977732-51977989)
               

               
               1-297, gnl|rheMac2|chr11 (49211172-49211429)
               

               
               1-297, gnl|rn3|chr7 (140117892-140118123)
               


               
               349-696, gnl|bosTau2|chr5 (19521646-19521981)
               

               
               349-696, gnl|Hg17|chr12 (50762905-50763264)
               

               
               349-696, gnl|Mm7|chr15 (101281720-101282001)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cov (0.132153)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	1-297, gnl\|bosTau2\|chr5 (19518976-19519257)
	1-297, gnl\|canFam2\|chr27 (5931637-5931378)
	1-297, gnl\|dasNov1\|scaffold_67004 (5273-5024)
	1-297, gnl\|echTel1\|scaffold_222248 (4229-3978)
	1-297, gnl\|hg17\|chr12 (50759767-50760024)
	1-297, gnl\|Hg17\|chr12 (50759819-50760106)
	1-297, gnl\|loxAfr1\|scaffold_93603 (8944-9193)
	1-297, gnl\|mm7\|chr15 (101279054-101279288)
	1-297, gnl\|Mm7\|chr15 (101279088-101279361)
	1-297, gnl\|panTro1\|chr10 (51977732-51977989)
	1-297, gnl\|rheMac2\|chr11 (49211172-49211429)
	1-297, gnl\|rn3\|chr7 (140117892-140118123)

	349-696, gnl\|bosTau2\|chr5 (19521646-19521981)
	349-696, gnl\|Hg17\|chr12 (50762905-50763264)
	349-696, gnl\|Mm7\|chr15 (101281720-101282001)