Non-Coding RNA Search

Ss1.1-Pig4-TMW8041K15.3

Sequence:


               
               GGCCATCATCCCTGCTCCCAGAATCAAGCATAATGCCAGACACTGCGATTGAGAAGCCAA
TCAATGTACCCTTTGGCAAGTCCCCCACACACACCTGGCACTCCCCACTACCAATCCCTG
GCACAGGGTTCCCAGAGAGCAGGTGCTGTACATTTTCCAGTTTTACAATGGGGCTGTTGA
CAGCCTTAATTAGGGAGGCATGAATTATGTGGCTGTTATGCAGAGCCCTACAATTAAGGC
GGGAAAGAGGGGCTGGAGGCAGCAAACGGAATCTGCCCTGTGAGCATGATTGTTGAGTCC
TGTCTCCTTTCTGGGTCTGACTTTCTCCAGTGTAGATTGGGGTACAGCAGAAGTGATTAA
TCAGGCTGGTATCTCTTTGGCCTGAGGTCCTGTGTTCTGGGAAAGGTACACAGTGGGGTG
TGGTGAGGAGGGGCTGCCTCAGGAGGCACTGAAGGGGTGGGGAGGAGAAGAGGCTGAGGG
ACCACTGCTGTACAGGCACAGCGACTGCAAATAGTTGACATGAACTCCTTGTGGGTGCTT
TCTACTGGTGTGATTTGTACAAACCAGCTCAACTCTTGCCTCAAGAAACTAGGTGGGACC
TATTTAAATGTCCTCCCACCTGTGAGCCAAGCCCCAACTTGAGGATATTTATCGTATTGT
ATTCTCTTGGGTGTCAAACAGAATTTTAAAAATTCTTAGATGTAAAACTTGTTTGCGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCATCATCCCTGCTCCCAGAATCAAGCATAATGCCAGACACTGCGATTGAGAAGCCAA
TCAATGTACCCTTTGGCAAGTCCCCCACACACACCTGGCACTCCCCACTACCAATCCCTG
GCACAGGGTTCCCAGAGAGCAGGTGCTGTACATTTTCCAGTTTTACAATGGGGCTGTTGA
CAGCCTTAATTAGGGAGGCATGAATTATGTGGCTGTTATGCAGAGCCCTACAATTAAGGC
GGGAAAGAGGGGCTGGAGGCAGCAAACGGAATCTGCCCTGTGAGCATGATTGTTGAGTCC
TGTCTCCTTTCTGGGTCTGACTTTCTCCAGTGTAGATTGGGGTACAGCAGAAGTGATTAA
TCAGGCTGGTATCTCTTTGGCCTGAGGTCCTGTGTTCTGGGAAAGGTACACAGTGGGGTG
TGGTGAGGAGGGGCTGCCTCAGGAGGCACTGAAGGGGTGGGGAGGAGAAGAGGCTGAGGG
ACCACTGCTGTACAGGCACAGCGACTGCAAATAGTTGACATGAACTCCTTGTGGGTGCTT
TCTACTGGTGTGATTTGTACAAACCAGCTCAACTCTTGCCTCAAGAAACTAGGTGGGACC
TATTTAAATGTCCTCCCACCTGTGAGCCAAGCCCCAACTTGAGGATATTTATCGTATTGT
ATTCTCTTGGGTGTCAAACAGAATTTTAAAAATTCTTAGATGTAAAACTTGTTTGCGAAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               79-277, - strand, RNAz p=0.779114
               

               
               357-474, + strand, RNAz p=0.937285

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-277, - strand, RNAz p=0.779114
               

               
               357-474, + strand, RNAz p=0.937285

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_205861, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_205861, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-718, gnl|bosTau2|chr2 (78334419-78335143)
               

               
               1-718, gnl|Hg17|chr1 (26481244-26481950)
               

               
               1-718, gnl|Mm7|chr4 (133348156-133347464)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-718, gnl|bosTau2|chr2 (78334419-78335143)
               

               
               1-718, gnl|Hg17|chr1 (26481244-26481950)
               

               
               1-718, gnl|Mm7|chr4 (133348156-133347464)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               mas (0.210305)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ute (0.132784)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ute (0.132784)

	79-277, - strand, RNAz p=0.779114
	357-474, + strand, RNAz p=0.937285

	1-718, gnl\|bosTau2\|chr2 (78334419-78335143)
	1-718, gnl\|Hg17\|chr1 (26481244-26481950)
	1-718, gnl\|Mm7\|chr4 (133348156-133347464)

	mas (0.210305)
	fhi (0.169578)
	cje (0.165235)
	hyp (0.142837)
	pty (0.142714)
	ute (0.132784)