Non-Coding RNA Search

Ss1.1-Pig4-TMW8041K24.5

Sequence:


               
               TTTTTTTTTTGCTTCACAGTGGTTTAATATGAACAGAGTTGAATATGACATTGTCTGACA
GAAGAATGAACATTTTGCTGAATAAAAGCCCCAAGTCAGGATATATACACAGCAGAAATG
GGGCCTCAGGCTCTCAGCACTTGTGCACAATGAAAGAAGGAATCTTTAAAAAAAAAAAAA
AGTAACAGGATACAAATGAAAAAGGCAGCAACAACACCAACATTGGGGAGGTGGGAAAGG
GAGCAGAGCCTTTCTCAAGGGGCTGTTCAGCCCCTGGCACAGGCCCAGCAGCTAGAAAGC
TGACCTGCCTCAGGGAACTTCAACATTTAGATGGCCTCTGAATCCCATGTCAAAATTCAA
TCCTAATCTCTCCGATCAGGGTCTTGTCAGAATCAGTAATCCTTTTCCCCCAAGACCCTA
TATAAAGAACTCCAATCCTTCCATGATAGGGATTCTAAGGAAAGAGCCCCCACTTTTGAC
CTGACACCAGAGTTAACCTACTCCCGTGCCACCATTTGGGATAGATATTGGGCCCCAGCA
AACAAACCACTACCTCCCAGACAGAAGCCCAGGAAAGTCGTCAGCCCTGATAAATTGCTT
CAGACTCTAAGATTTAGAAATCTATACCCAGCTTGCAAACCCTAGCTCAACTTCTGGGAA
GAATGCTGGAGTTCCGTGGGAAACAAGTGCAGGCAGTTCAATAACCCTGTGACCAAGCTG
GGGAGGGCAGTGACAACTCTTGCCCCTAAGCCCCATTCAACAGCTCAAAGTGCTTAGGAG
AAATCAGACTGTGTGGTTTGTTCATGTGTTTCTGCCCTGTGGCAGCACTAAATGGAATGG
GGGAAAGGGAGAATGGAAGGAAGAGAGTGATGATGCCCTTCCCTACCACCAGGAGGTACC
TGGAAAATGATCCACTCCAACCCCTCAGGGAGTTACCTGGCAGTGGTGAGTTTCCCCCAG
CCCTAAAGCCACCAAACCTGCAAAGCTAACCCATAAAGTAGCAAGGGCTTGGGGAGGGAG
AACTGCTGACTCAGCCTATGGTAATGACTCGCCTACTGGTGAGCAAGAACAGGCAGCCAG
AGTGGGGAGCCACAAAGGAGAGGGGCTAGGCAACAGGAGCTCCCCTACTGCCCTATGGCT
TTCTTCTGACTCTGAAGCAGCCATGATGGGCCCAGAAAACCCAAACACATTGCGCCACAC
AAATGACTGCTTTGACTCTACCACTACTACCATGAAAAGCAACAGGGAGAGAGAAAATAA
CAAAGGAAACTGTTGCGATAACTGGGATCAGGCCTGGAGAAAACAAGGAGAGCTTTTGAG
TCTCTGCCACCTTCCCCAAAAGGAAAAAGTTCATGCAGGTAGGAAAGGCAGGATGTTTCC
CTGCTCGGCGTTCCTGGTTAAACCTAAGAGTAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTGCTTCACAGTGGTTTAATATGAACAGAGTTGAATATGACATTGTCTGACA
GAAGAATGAACATTTTGCTGAATAAAAGCCCCAAGTCAGGATATATACACAGCAGAAATG
GGGCCTCAGGCTCTCAGCACTTGTGCACAATGAAAGAAGGAATCTTTAAAAAAAAAAAAA
AGTAACAGGATACAAATGAAAAAGGCAGCAACAACACCAACATTGGGGAGGTGGGAAAGG
GAGCAGAGCCTTTCTCAAGGGGCTGTTCAGCCCCTGGCACAGGCCCAGCAGCTAGAAAGC
TGACCTGCCTCAGGGAACTTCAACATTTAGATGGCCTCTGAATCCCATGTCAAAATTCAA
TCCTAATCTCTCCGATCAGGGTCTTGTCAGAATCAGTAATCCTTTTCCCCCAAGACCCTA
TATAAAGAACTCCAATCCTTCCATGATAGGGATTCTAAGGAAAGAGCCCCCACTTTTGAC
CTGACACCAGAGTTAACCTACTCCCGTGCCACCATTTGGGATAGATATTGGGCCCCAGCA
AACAAACCACTACCTCCCAGACAGAAGCCCAGGAAAGTCGTCAGCCCTGATAAATTGCTT
CAGACTCTAAGATTTAGAAATCTATACCCAGCTTGCAAACCCTAGCTCAACTTCTGGGAA
GAATGCTGGAGTTCCGTGGGAAACAAGTGCAGGCAGTTCAATAACCCTGTGACCAAGCTG
GGGAGGGCAGTGACAACTCTTGCCCCTAAGCCCCATTCAACAGCTCAAAGTGCTTAGGAG
AAATCAGACTGTGTGGTTTGTTCATGTGTTTCTGCCCTGTGGCAGCACTAAATGGAATGG
GGGAAAGGGAGAATGGAAGGAAGAGAGTGATGATGCCCTTCCCTACCACCAGGAGGTACC
TGGAAAATGATCCACTCCAACCCCTCAGGGAGTTACCTGGCAGTGGTGAGTTTCCCCCAG
CCCTAAAGCCACCAAACCTGCAAAGCTAACCCATAAAGTAGCAAGGGCTTGGGGAGGGAG
AACTGCTGACTCAGCCTATGGTAATGACTCGCCTACTGGTGAGCAAGAACAGGCAGCCAG
AGTGGGGAGCCACAAAGGAGAGGGGCTAGGCAACAGGAGCTCCCCTACTGCCCTATGGCT
TTCTTCTGACTCTGAAGCAGCCATGATGGGCCCAGAAAACCCAAACACATTGCGCCACAC
AAATGACTGCTTTGACTCTACCACTACTACCATGAAAAGCAACAGGGAGAGAGAAAATAA
CAAAGGAAACTGTTGCGATAACTGGGATCAGGCCTGGAGAAAACAAGGAGAGCTTTTGAG
TCTCTGCCACCTTCCCCAAAAGGAAAAAGTTCATGCAGGTAGGAAAGGCAGGATGTTTCC
CTGCTCGGCGTTCCTGGTTAAACCTAAGAGTAAGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55663370|ref|XP_531310.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55663370|ref|XP_531310.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               239-480, - strand, RNAz p=0.972676
               

               
               1038-1155, - strand, RNAz p=0.816156

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-480, - strand, RNAz p=0.972676
               

               
               1038-1155, - strand, RNAz p=0.816156

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               4-480, gnl|bosTau2|chr25 (2616890-2617331)
               

               
               4-480, gnl|Hg17|chrX (70062126-70062583)
               

               
               4-480, gnl|Mm7|chrX (96539322-96539764)
               


               
               507-675, gnl|bosTau2|chr25 (2617328-2617489)
               

               
               507-675, gnl|Hg17|chrX (70062580-70062860)
               

               
               507-675, gnl|Mm7|chrX (96539761-96540009)
               


               
               871-1416, gnl|bosTau2|chr25 (2617497-2618046)
               

               
               871-1416, gnl|Hg17|chrX (70062974-70063518)
               

               
               871-1416, gnl|Mm7|chrX (96540029-96540755)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-480, gnl|bosTau2|chr25 (2616890-2617331)
               

               
               4-480, gnl|Hg17|chrX (70062126-70062583)
               

               
               4-480, gnl|Mm7|chrX (96539322-96539764)
               


               
               507-675, gnl|bosTau2|chr25 (2617328-2617489)
               

               
               507-675, gnl|Hg17|chrX (70062580-70062860)
               

               
               507-675, gnl|Mm7|chrX (96539761-96540009)
               


               
               871-1416, gnl|bosTau2|chr25 (2617497-2618046)
               

               
               871-1416, gnl|Hg17|chrX (70062974-70063518)
               

               
               871-1416, gnl|Mm7|chrX (96540029-96540755)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cbl (0.229595)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	239-480, - strand, RNAz p=0.972676
	1038-1155, - strand, RNAz p=0.816156

	4-480, gnl\|bosTau2\|chr25 (2616890-2617331)
	4-480, gnl\|Hg17\|chrX (70062126-70062583)
	4-480, gnl\|Mm7\|chrX (96539322-96539764)

	507-675, gnl\|bosTau2\|chr25 (2617328-2617489)
	507-675, gnl\|Hg17\|chrX (70062580-70062860)
	507-675, gnl\|Mm7\|chrX (96539761-96540009)

	871-1416, gnl\|bosTau2\|chr25 (2617497-2618046)
	871-1416, gnl\|Hg17\|chrX (70062974-70063518)
	871-1416, gnl\|Mm7\|chrX (96540029-96540755)

	cbl (0.229595)
	cty (0.20816)
	col (0.195008)
	ill (0.175593)
	nco (0.161734)
	csp (0.161186)
	pty (0.142714)
	hlv (0.139256)
	pla (0.133672)
	ecc (0.115035)
	jca (0.11396)