Non-Coding RNA Search

Ss1.1-Pig4-TMW8041L17.5

Sequence:


               
               GGAAGTTCACTGTTTTATTCAACAACTTTTACATGTTAGGAACATATAGAAACAAAACTT
TCATCTGATTTCTCACTCATTTGGCTGTTTGGTATGATGAGCACACACACCTTCTTTTAA
TGGACTCGTGCACAACAGCTACGGGTCACACATTTGGTATAAGGCTGTGAACGAGACACA
CAGGATTGAGTACAGGAAGAGTCCGGGAACTGTCCATTTAGGTCCCTCAGTGGTCAGCAT
GGGAGATTCCACAAAAGCTCTGAAGGCATCTAGTCTGGTTTTGGCGTGAGATGGAGGAGG
AGGTAGAGAAAGGAAGAATGCCCAAAGAACATATCATGAGCTGATCTTTGAACAAGGAAT
AGGAATTAGCAAAGCAAAGAATACTGAAGATGTGAGGAGCAGGATAACCTTGTCAGATGT
CAGTTTTAGTCCCTTCGTCCCCTGAGCTGAAAACACCATCAGGCTCTCCTGACACCACCG
CTGGGAACGAGTCTTACAGGACTGCATCCTTTTCTTATATCGCTTTATACATTAACAGAA
AAGCAGTCTCGTATGTGATGCTGGGCCCATCCTACAACCATGCAATGGAAACCCCTGCAA
CCTTCATCCTGGTGGGTATCCCAGGTCTGCCATCTTCACATGTCTGGCTGGCTGTCTCAC
TGAGTATCACGTATGTCGCAGCCCTGCTGGGAAACAGCCTCATAGTGACTGTGATCTGGA
CAGACTCCGCTCTGCAAGAGCCCATGTACCACCTCCTATGTGTGCTGGCTGCCGTGGACA
TGGCCATGGCTTCCTCTGTGGTGCCCACGATGGTGAGCATCTTCTCCTCCGGGCACAGCT
CCATCAGCTTTACTGCCTGCTTCACTCAGATGTACTTTGTCCATGCAGCCACAGCTATGG
AGACAGGACTGCTCCTGGCCATGGCTTTCGACCGCTATGTGGCCGTCTGTAAGCCCCTAC
ACCACAAGAGAATTCTCACGCCTCGCATGCTGTGGGGGATGAGCGTGACCATTGCCGTCA
GAGCCATCACATTCATGACACCACTGAGTTGGATGGTGAGTCAGCTCCCTTTCTGTGGCT
CCAATGTCGTTCTCCATTCCTACTGTGAGCACATGGCCGTGGCCACGTTGGCGTGCGCTG
ACCCCAGGCCCAGTTGTCTCTACAGCCTGATTGGTTCCTCCATTATTGTGGGTTCTGATG
TGGCCTTTATTGCTGCCTCCTATATCCTGATTCTTCAGGCCGTATTCCGGCTCTCCTCAA
AGAATGCTCAGCTGAAAGCATTAGGCACCTGTGGCTCCCACGTGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGTTCACTGTTTTATTCAACAACTTTTACATGTTAGGAACATATAGAAACAAAACTT
TCATCTGATTTCTCACTCATTTGGCTGTTTGGTATGATGAGCACACACACCTTCTTTTAA
TGGACTCGTGCACAACAGCTACGGGTCACACATTTGGTATAAGGCTGTGAACGAGACACA
CAGGATTGAGTACAGGAAGAGTCCGGGAACTGTCCATTTAGGTCCCTCAGTGGTCAGCAT
GGGAGATTCCACAAAAGCTCTGAAGGCATCTAGTCTGGTTTTGGCGTGAGATGGAGGAGG
AGGTAGAGAAAGGAAGAATGCCCAAAGAACATATCATGAGCTGATCTTTGAACAAGGAAT
AGGAATTAGCAAAGCAAAGAATACTGAAGATGTGAGGAGCAGGATAACCTTGTCAGATGT
CAGTTTTAGTCCCTTCGTCCCCTGAGCTGAAAACACCATCAGGCTCTCCTGACACCACCG
CTGGGAACGAGTCTTACAGGACTGCATCCTTTTCTTATATCGCTTTATACATTAACAGAA
AAGCAGTCTCGTATGTGATGCTGGGCCCATCCTACAACCATGCAATGGAAACCCCTGCAA
CCTTCATCCTGGTGGGTATCCCAGGTCTGCCATCTTCACATGTCTGGCTGGCTGTCTCAC
TGAGTATCACGTATGTCGCAGCCCTGCTGGGAAACAGCCTCATAGTGACTGTGATCTGGA
CAGACTCCGCTCTGCAAGAGCCCATGTACCACCTCCTATGTGTGCTGGCTGCCGTGGACA
TGGCCATGGCTTCCTCTGTGGTGCCCACGATGGTGAGCATCTTCTCCTCCGGGCACAGCT
CCATCAGCTTTACTGCCTGCTTCACTCAGATGTACTTTGTCCATGCAGCCACAGCTATGG
AGACAGGACTGCTCCTGGCCATGGCTTTCGACCGCTATGTGGCCGTCTGTAAGCCCCTAC
ACCACAAGAGAATTCTCACGCCTCGCATGCTGTGGGGGATGAGCGTGACCATTGCCGTCA
GAGCCATCACATTCATGACACCACTGAGTTGGATGGTGAGTCAGCTCCCTTTCTGTGGCT
CCAATGTCGTTCTCCATTCCTACTGTGAGCACATGGCCGTGGCCACGTTGGCGTGCGCTG
ACCCCAGGCCCAGTTGTCTCTACAGCCTGATTGGTTCCTCCATTATTGTGGGTTCTGATG
TGGCCTTTATTGCTGCCTCCTATATCCTGATTCTTCAGGCCGTATTCCGGCTCTCCTCAA
AGAATGCTCAGCTGAAAGCATTAGGCACCTGTGGCTCCCACGTGGGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61838949|ref|XP_587480.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61838949|ref|XP_587480.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               836-1075, - strand, RNAz p=0.975575
               

               
               1039-1158, + strand, RNAz p=0.873931

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               836-1075, - strand, RNAz p=0.975575
               

               
               1039-1158, + strand, RNAz p=0.873931

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               2-1308, gnl|bosTau2|chr15 (32077695-32076360)
               

               
               2-1308, gnl|Hg17|chr11 (4571323-4572595)
               


               
               598-1243, gnl|bosTau2|chr13 (21743307-21743952)
               

               
               598-1243, gnl|Hg17|chr11 (5964654-5964009)
               

               
               598-1243, gnl|Mm7|chr7 (101237695-101237050)
               


               
               600-1223, gnl|bosTau2|chr13 (21735993-21736615)
               

               
               600-1223, gnl|Hg17|chr11 (6045565-6044943)
               

               
               600-1223, gnl|Mm7|chr7 (101260726-101260103)
               


               
               644-960, gnl|bosTau2|chr13 (21770134-21770450)
               

               
               644-960, gnl|Hg17|chr11 (6024470-6024154)
               

               
               644-960, gnl|Mm7|chr7 (101177966-101178282)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1308, gnl|bosTau2|chr15 (32077695-32076360)
               

               
               2-1308, gnl|Hg17|chr11 (4571323-4572595)
               


               
               598-1243, gnl|bosTau2|chr13 (21743307-21743952)
               

               
               598-1243, gnl|Hg17|chr11 (5964654-5964009)
               

               
               598-1243, gnl|Mm7|chr7 (101237695-101237050)
               


               
               600-1223, gnl|bosTau2|chr13 (21735993-21736615)
               

               
               600-1223, gnl|Hg17|chr11 (6045565-6044943)
               

               
               600-1223, gnl|Mm7|chr7 (101260726-101260103)
               


               
               644-960, gnl|bosTau2|chr13 (21770134-21770450)
               

               
               644-960, gnl|Hg17|chr11 (6024470-6024154)
               

               
               644-960, gnl|Mm7|chr7 (101177966-101178282)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lin (0.145603)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)

	836-1075, - strand, RNAz p=0.975575
	1039-1158, + strand, RNAz p=0.873931

	2-1308, gnl\|bosTau2\|chr15 (32077695-32076360)
	2-1308, gnl\|Hg17\|chr11 (4571323-4572595)

	598-1243, gnl\|bosTau2\|chr13 (21743307-21743952)
	598-1243, gnl\|Hg17\|chr11 (5964654-5964009)
	598-1243, gnl\|Mm7\|chr7 (101237695-101237050)

	600-1223, gnl\|bosTau2\|chr13 (21735993-21736615)
	600-1223, gnl\|Hg17\|chr11 (6045565-6044943)
	600-1223, gnl\|Mm7\|chr7 (101260726-101260103)

	644-960, gnl\|bosTau2\|chr13 (21770134-21770450)
	644-960, gnl\|Hg17\|chr11 (6024470-6024154)
	644-960, gnl\|Mm7\|chr7 (101177966-101178282)