Non-Coding RNA Search

Ss1.1-Pig4-TMW8041L19.5

Sequence:


               
               CAAGGAGAAGTAAAAACTGAGAAGAGACCAAACTTGGTTGATCGACAGGCATCCACAGTT
GAATATCTCCCAGGCATGTTACATTCAAATTGCCCCAAAGGTCTCCTACCCAAATTCTCC
AGCTGGTCTTTGGTTAAACTAGGTCCCGCTAAATCTTATAATTTTCATACTGGTTTGGAC
CAACAGGGCTTCATTCCAGGAACAAACTATCTTATGCCTTGGGACATTGTCATCAGGACT
AGAGCTGAAGACGAAGGAGACTTAGACACAAATTCTTGGCCTGCTCCAAATAAAGCTATT
CCTGGAAAGAGAAGTGCAGTTGTAATGGGAAGAGGGAGACGGCGAGATGACATAGCTCGA
GCATTTGTGGGCTTTGAATATGAAGACTCTCGAGGTCGGAGGTTTATGTGCTCGGGACCT
GACAAAGTAATGAAAGTTATGGGAAGTGGGCCCAAGGAATCAGCTTTAAAAGCCCTGAAT
AGTGATATGCCCTTATATATCCTGTCATCATCTCAGGGCAGAGGGCTAAAACCACATTAT
GCTCAACTTATGAGGCTTTTTGTTGTGGTTCCTGATGCTCCTTTGCAGATAATACTCATG
CCTCAGGTTCAACCAGGCCCACCACCATGTCCAGTATTCTACCCGGAAAAACAAGAAATC
ACTCTCCCATCCGATGGCCTCTGGGTTTTGAGATTTCCTTATGCCTATGTGACTGAGAGA
GGACCTTGTTTCCCTCCAAAGGAGAACGTGCAATTGATGAGTTACAAGGTGCTCCGTGGG
GTTCTTAAAGCAATAACACAATGAATGCTTTCCAGCTAATACAGTCCTAAGCTTGAGCTG
GTTTTTAGTTTTGGTGTGTAGGGATATTTTTTGGTACGTGATACTGTGTTTTCTTGAACC
CCAAATGTGTTTTTGTTACAGGAGTTCAGTATTTGGACAGTCATTGTTTCACTATTTCAT
GATATTGTTGATATTTATTGTAAATAGGGGTACAACTTCCTAATAAACATTACTTCTTCT
AGAAAAGGACATAAAATATGTGATTGACACCTCTGTTTTCTCTTGTTTCTGTTTCATTGT
CCGTAATAAAATGTATTTCTGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGAGAAGTAAAAACTGAGAAGAGACCAAACTTGGTTGATCGACAGGCATCCACAGTT
GAATATCTCCCAGGCATGTTACATTCAAATTGCCCCAAAGGTCTCCTACCCAAATTCTCC
AGCTGGTCTTTGGTTAAACTAGGTCCCGCTAAATCTTATAATTTTCATACTGGTTTGGAC
CAACAGGGCTTCATTCCAGGAACAAACTATCTTATGCCTTGGGACATTGTCATCAGGACT
AGAGCTGAAGACGAAGGAGACTTAGACACAAATTCTTGGCCTGCTCCAAATAAAGCTATT
CCTGGAAAGAGAAGTGCAGTTGTAATGGGAAGAGGGAGACGGCGAGATGACATAGCTCGA
GCATTTGTGGGCTTTGAATATGAAGACTCTCGAGGTCGGAGGTTTATGTGCTCGGGACCT
GACAAAGTAATGAAAGTTATGGGAAGTGGGCCCAAGGAATCAGCTTTAAAAGCCCTGAAT
AGTGATATGCCCTTATATATCCTGTCATCATCTCAGGGCAGAGGGCTAAAACCACATTAT
GCTCAACTTATGAGGCTTTTTGTTGTGGTTCCTGATGCTCCTTTGCAGATAATACTCATG
CCTCAGGTTCAACCAGGCCCACCACCATGTCCAGTATTCTACCCGGAAAAACAAGAAATC
ACTCTCCCATCCGATGGCCTCTGGGTTTTGAGATTTCCTTATGCCTATGTGACTGAGAGA
GGACCTTGTTTCCCTCCAAAGGAGAACGTGCAATTGATGAGTTACAAGGTGCTCCGTGGG
GTTCTTAAAGCAATAACACAATGAATGCTTTCCAGCTAATACAGTCCTAAGCTTGAGCTG
GTTTTTAGTTTTGGTGTGTAGGGATATTTTTTGGTACGTGATACTGTGTTTTCTTGAACC
CCAAATGTGTTTTTGTTACAGGAGTTCAGTATTTGGACAGTCATTGTTTCACTATTTCAT
GATATTGTTGATATTTATTGTAAATAGGGGTACAACTTCCTAATAAACATTACTTCTTCT
AGAAAAGGACATAAAATATGTGATTGACACCTCTGTTTTCTCTTGTTTCTGTTTCATTGT
CCGTAATAAAATGTATTTCTGGTA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.641317
               

               
               360-479, + strand, RNAz p=0.704477

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.641317
               

               
               360-479, + strand, RNAz p=0.704477

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               361-428, + strand, RNAmicro p=0.970961

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               361-428, + strand, RNAmicro p=0.970961

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-567, gnl|bosTau2|chr19 (4507754-4508319)
               

               
               1-567, gnl|Hg17|chr17 (54645139-54645705)
               

               
               1-567, gnl|Mm7|chr11 (87150679-87150113)
               


               
               603-1104, gnl|bosTau2|chr19 (4508930-4509425)
               

               
               603-1104, gnl|Hg17|chr17 (54646944-54647446)
               

               
               603-1104, gnl|Mm7|chr11 (87148062-87147582)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-567, gnl|bosTau2|chr19 (4507754-4508319)
               

               
               1-567, gnl|Hg17|chr17 (54645139-54645705)
               

               
               1-567, gnl|Mm7|chr11 (87150679-87150113)
               


               
               603-1104, gnl|bosTau2|chr19 (4508930-4509425)
               

               
               603-1104, gnl|Hg17|chr17 (54646944-54647446)
               

               
               603-1104, gnl|Mm7|chr11 (87148062-87147582)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               hlv (0.278513)
               

               
               fcc (0.197785)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.278513)
               

               
               fcc (0.197785)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	80-199, - strand, RNAz p=0.641317
	360-479, + strand, RNAz p=0.704477

	1-567, gnl\|bosTau2\|chr19 (4507754-4508319)
	1-567, gnl\|Hg17\|chr17 (54645139-54645705)
	1-567, gnl\|Mm7\|chr11 (87150679-87150113)

	603-1104, gnl\|bosTau2\|chr19 (4508930-4509425)
	603-1104, gnl\|Hg17\|chr17 (54646944-54647446)
	603-1104, gnl\|Mm7\|chr11 (87148062-87147582)

	hlv (0.278513)
	fcc (0.197785)
	ste (0.135208)
	thg (0.126791)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)