Non-Coding RNA Search

Ss1.1-Pig4-TMW8041L20.3

Sequence:


               
               CTTTTTTTGTTGTATTTTGTTTTTTTTAGAAAAACCAAATGTCTTTATTCCTGAATAGTT
TAGTATGGCGGTGGGGTCCCGAGGCCCCTCGAGAGAGAGCCCTGGAGCCCAGGGACTCGG
TCTAGAGGCCAGCTGGGGAGCAAAGGGTGCGAGGATTGGCTCCTCCGCAGTCCGGGTCTT
GCAGGGGACGGCGATCAGTCCGAAAGTCTGAACGAGGGAACCCGAGTCCCCGACCCGGCG
CGCTCCGACCGTGGGAAGGAGGCTGCTCCGGGCGCCTGTGCCGCGGCGGGTACGGAAACG
GCGGCTCGCCCGGAGTCAGCGCCCAGTCCCAGGCGAGACCCCGGCGAGCCCGCCGCCCCC
GCTGGCTCTTTGGCGGGCGGCGTAGTCACTTCGGTCCGGTCGGGCCCAGCCCCCTGTCTA
CACCTGCTACAGCTCCTGGTCCTCGTAGAGCAGGGCTCCGCTGAAGATGGTGAGCGGCTC
CTCCGAGTGCGCCAGCTGCCCCATGACCAGGTCGATGCAGACCGTATCCCCGGCCTGCAG
CGGCAGGATAAGGCTGAAGACGCCTAGGGCGCCCGGGCTGGGCTGGCTCTCGGCCACCGG
CTTATTCTCCAGGCCCTCAGGCTCGTAGCCACCGGAGTCTATGCGGGCCACACCCAGGTT
GGAGCGCGACAGCACGGCCTCCACTTTCTCGTGCCGATGCCCAGTCAGCACCGCACTCAG
CAAGTAGCGTCCAGCCAGAGGGGCGGTGAACACGCCAGTCTCTGGATCATAGTAGCCCCC
GTCATTGAGCAGGACTCTGTCAAAGGGCACTGTGCCTGGTTCGGACCGGGGCAAACTCAG
GGCAGCTGAAAACGCCACCCGGGGCACAGAGGCTGCTGGTGCCCCCTCCACTCCCTGTTC
ACCTTGGGGACCTGGTGGCCCGATGGGCCCCTTTTCGCCATCCTTGCCTGGAGGTCCTGG
AGGTCCAGCAGGGCCTGGGGGTCCCTGCACCCCAGGAGGCCCTGGCGGCCCAGCCTCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTTTTGTTGTATTTTGTTTTTTTTAGAAAAACCAAATGTCTTTATTCCTGAATAGTT
TAGTATGGCGGTGGGGTCCCGAGGCCCCTCGAGAGAGAGCCCTGGAGCCCAGGGACTCGG
TCTAGAGGCCAGCTGGGGAGCAAAGGGTGCGAGGATTGGCTCCTCCGCAGTCCGGGTCTT
GCAGGGGACGGCGATCAGTCCGAAAGTCTGAACGAGGGAACCCGAGTCCCCGACCCGGCG
CGCTCCGACCGTGGGAAGGAGGCTGCTCCGGGCGCCTGTGCCGCGGCGGGTACGGAAACG
GCGGCTCGCCCGGAGTCAGCGCCCAGTCCCAGGCGAGACCCCGGCGAGCCCGCCGCCCCC
GCTGGCTCTTTGGCGGGCGGCGTAGTCACTTCGGTCCGGTCGGGCCCAGCCCCCTGTCTA
CACCTGCTACAGCTCCTGGTCCTCGTAGAGCAGGGCTCCGCTGAAGATGGTGAGCGGCTC
CTCCGAGTGCGCCAGCTGCCCCATGACCAGGTCGATGCAGACCGTATCCCCGGCCTGCAG
CGGCAGGATAAGGCTGAAGACGCCTAGGGCGCCCGGGCTGGGCTGGCTCTCGGCCACCGG
CTTATTCTCCAGGCCCTCAGGCTCGTAGCCACCGGAGTCTATGCGGGCCACACCCAGGTT
GGAGCGCGACAGCACGGCCTCCACTTTCTCGTGCCGATGCCCAGTCAGCACCGCACTCAG
CAAGTAGCGTCCAGCCAGAGGGGCGGTGAACACGCCAGTCTCTGGATCATAGTAGCCCCC
GTCATTGAGCAGGACTCTGTCAAAGGGCACTGTGCCTGGTTCGGACCGGGGCAAACTCAG
GGCAGCTGAAAACGCCACCCGGGGCACAGAGGCTGCTGGTGCCCCCTCCACTCCCTGTTC
ACCTTGGGGACCTGGTGGCCCGATGGGCCCCTTTTCGCCATCCTTGCCTGGAGGTCCTGG
AGGTCCAGCAGGGCCTGGGGGTCCCTGCACCCCAGGAGGCCCTGGCGGCCCAGCCTCACC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q96IH6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96IH6_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-756, gnl|bosTau2|chr11 (53047461-53046710)
               

               
               5-756, gnl|Hg17|chr2 (27220930-27220196)
               

               
               5-756, gnl|Mm7|chr5 (29953799-29953130)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-756, gnl|bosTau2|chr11 (53047461-53046710)
               

               
               5-756, gnl|Hg17|chr2 (27220930-27220196)
               

               
               5-756, gnl|Mm7|chr5 (29953799-29953130)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               eru (0.480192)
               

               
               jca (0.34188)
               

               
               nje (0.33184)
               

               
               clu (0.239292)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.480192)
               

               
               jca (0.34188)
               

               
               nje (0.33184)
               

               
               clu (0.239292)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

	5-756, gnl\|bosTau2\|chr11 (53047461-53046710)
	5-756, gnl\|Hg17\|chr2 (27220930-27220196)
	5-756, gnl\|Mm7\|chr5 (29953799-29953130)

	eru (0.480192)
	jca (0.34188)
	nje (0.33184)
	clu (0.239292)
	fli (0.202881)
	nlu (0.191681)
	nco (0.161734)
	cag (0.151194)
	nca (0.136874)
	nmm (0.132802)
	cov (0.132153)
	eep (0.122564)
	jej (0.0989218)