Non-Coding RNA Search

Ss1.1-Pig4-TMW8041M04.3.5

Sequence:


               
               CTCTAATAAGCCTTGGCTCACTGATGTTTCCAGACAGTATTAATCAAATGCATGAGGTGT
CATTGAAGCAAAGCCTGGTCAGTGGTCCTGCGTGATCACACACTGAAGGAGAAGGGTGGG
CGAGGCAAGGATGGTGTTGTCAGGTTGGATGTCGAAGGCTCCTGGCTTCCCCGTGACTTG
TAAGCGTGCCTTGTTTTTTATTTCACTATGTCTGTAGTTGACAAGTCTGGCTTCATCACC
AATTTTTTTAAAATGCTTCCACTTTGGGGTTCCATTTAGGAGCTTTCTAGAACGTCGAGG
ATGTTTTAAGCTTCCCTTTTATGTTAAGTTCCAGTTTGATGTGGATTAGGTTAAGGCAGA
GGCGATGGTCTTGGCGTCCTGGGTTCAAAGTCAGCATTGGAATTCCAACACACATGACTG
TGTGTCGAGAGGCCGTGTTGGGAAGAGAGTCTGATTTTCTAAAATATGCATTAAATGCAT
AAATTACAAATCAGAGCCGAGGAGGGAGGTGCTTTAACAGGAGTGATATCGATACTCTTT
CCACTAGGAAGAGACGGAAATTCTATCTCTACGGAGGAAGGCCAAGGTTGATCAACTTAA
CCTTGTATTTGTGATTTTTAAGCTGGTTTTGCTCGGTGGGAAGCTTTGTGTGCGTTTGTG
TCTGTCAGCGCCGTGTCTTTTAATAGTGTCTGCTTTTACTGTTACTTCTCGCTGTTGGAA
GCATGTTTGGGTTTTTGCGTGGTGTCGGACGTTGGCCTTGGGGAAAAGCCAGCCTTTGAG
GGAGCACTGCCCTGTGGAATGACCTTCGCCTCGAGGTGGCTGAGGCATCCGGGGACGGGC
GGCCTCTCACGCCTCCTGGAGAAACCTGACATTTACAATGGGTTGTATTTGTTGGGCGAA
AAGGCGGATGCATTCATAGAGCAGAGAGAACCTGTTGGCTTAAGGTCTTCCACGAGTTAG
AGGGTTTCTCTGGGGGAAATGTTTATGTTTTGTAACTTCTAGAAAGCCAGAAAATGGGCT
CTGATTTCATAGCCAGCATTTTGATAAAATGCCATAAAATAAAGGCCATCAAGAGGTTTT
TGGTTTTTTTTTTAACCAGGAAGTTTTTTGTTCCCCAAACCTTTTAGATGAAGCCAGTGA
TTCCCAGTTCTCAGCCAAGGCCCGACCTGAGGGCCCCCGACCTGAGGGCCCCCGCCCTGG
GAAAGCCTTCTAGGTGTCACGACACTGAATCCTGCGAAGGCATTTCCTCTACAGACATAG
CGTGACAGGAGGTAAAATGCAGAGGTGCACTTTTTTTTAAGAAGCTTTTAAACAATGTGA
CTAGGTTGGTGTTGAGAACATCAGTGGCCTTATCCTGAGATTTCATAAGGCTGAGTTTGC
ACATGTGGACTCAAGTTTTGCACGCAGGTAAAGAGCTGCGGACGTGCAAAACCTAAGAGG
CACCATTACAAGTCACTAGGAGCCGCCTCAAAGAGCAGCTTCTTTGGGCAACAGACAAAG
AAGAGACCGGAGGTGTGCGCTGTCGTGTGAGTGTGGCGGAACCGTTCGCTGGAGTTGCCA
GTCAGCCTGGGGACGTGTGTGTGTGTGTGACTGACCGTCGCTGTTGGAAGATGTGAGAAT
ACGGCAGAGCTCGCTGTGTTCGTCCTGTACTCTGCGCAGGCCAGTCCGATTGCTATTTTT
TTATCCAGAGGCTTATTAATTGAATGATGTGACAAAATGATGTATGAGAATGAAGACAAT
GAAATTCTTTGTTTCTGGGTGGAAAGAGGTACCAGATTAGATTTATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTAATAAGCCTTGGCTCACTGATGTTTCCAGACAGTATTAATCAAATGCATGAGGTGT
CATTGAAGCAAAGCCTGGTCAGTGGTCCTGCGTGATCACACACTGAAGGAGAAGGGTGGG
CGAGGCAAGGATGGTGTTGTCAGGTTGGATGTCGAAGGCTCCTGGCTTCCCCGTGACTTG
TAAGCGTGCCTTGTTTTTTATTTCACTATGTCTGTAGTTGACAAGTCTGGCTTCATCACC
AATTTTTTTAAAATGCTTCCACTTTGGGGTTCCATTTAGGAGCTTTCTAGAACGTCGAGG
ATGTTTTAAGCTTCCCTTTTATGTTAAGTTCCAGTTTGATGTGGATTAGGTTAAGGCAGA
GGCGATGGTCTTGGCGTCCTGGGTTCAAAGTCAGCATTGGAATTCCAACACACATGACTG
TGTGTCGAGAGGCCGTGTTGGGAAGAGAGTCTGATTTTCTAAAATATGCATTAAATGCAT
AAATTACAAATCAGAGCCGAGGAGGGAGGTGCTTTAACAGGAGTGATATCGATACTCTTT
CCACTAGGAAGAGACGGAAATTCTATCTCTACGGAGGAAGGCCAAGGTTGATCAACTTAA
CCTTGTATTTGTGATTTTTAAGCTGGTTTTGCTCGGTGGGAAGCTTTGTGTGCGTTTGTG
TCTGTCAGCGCCGTGTCTTTTAATAGTGTCTGCTTTTACTGTTACTTCTCGCTGTTGGAA
GCATGTTTGGGTTTTTGCGTGGTGTCGGACGTTGGCCTTGGGGAAAAGCCAGCCTTTGAG
GGAGCACTGCCCTGTGGAATGACCTTCGCCTCGAGGTGGCTGAGGCATCCGGGGACGGGC
GGCCTCTCACGCCTCCTGGAGAAACCTGACATTTACAATGGGTTGTATTTGTTGGGCGAA
AAGGCGGATGCATTCATAGAGCAGAGAGAACCTGTTGGCTTAAGGTCTTCCACGAGTTAG
AGGGTTTCTCTGGGGGAAATGTTTATGTTTTGTAACTTCTAGAAAGCCAGAAAATGGGCT
CTGATTTCATAGCCAGCATTTTGATAAAATGCCATAAAATAAAGGCCATCAAGAGGTTTT
TGGTTTTTTTTTTAACCAGGAAGTTTTTTGTTCCCCAAACCTTTTAGATGAAGCCAGTGA
TTCCCAGTTCTCAGCCAAGGCCCGACCTGAGGGCCCCCGACCTGAGGGCCCCCGCCCTGG
GAAAGCCTTCTAGGTGTCACGACACTGAATCCTGCGAAGGCATTTCCTCTACAGACATAG
CGTGACAGGAGGTAAAATGCAGAGGTGCACTTTTTTTTAAGAAGCTTTTAAACAATGTGA
CTAGGTTGGTGTTGAGAACATCAGTGGCCTTATCCTGAGATTTCATAAGGCTGAGTTTGC
ACATGTGGACTCAAGTTTTGCACGCAGGTAAAGAGCTGCGGACGTGCAAAACCTAAGAGG
CACCATTACAAGTCACTAGGAGCCGCCTCAAAGAGCAGCTTCTTTGGGCAACAGACAAAG
AAGAGACCGGAGGTGTGCGCTGTCGTGTGAGTGTGGCGGAACCGTTCGCTGGAGTTGCCA
GTCAGCCTGGGGACGTGTGTGTGTGTGTGACTGACCGTCGCTGTTGGAAGATGTGAGAAT
ACGGCAGAGCTCGCTGTGTTCGTCCTGTACTCTGCGCAGGCCAGTCCGATTGCTATTTTT
TTATCCAGAGGCTTATTAATTGAATGATGTGACAAAATGATGTATGAGAATGAAGACAAT
GAAATTCTTTGTTTCTGGGTGGAAAGAGGTACCAGATTAGATTTATCT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               401-558, + strand, RNAz p=0.999236
               

               
               739-930, - strand, RNAz p=0.656147
               

               
               971-1103, - strand, RNAz p=0.983192

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               401-558, + strand, RNAz p=0.999236
               

               
               739-930, - strand, RNAz p=0.656147
               

               
               971-1103, - strand, RNAz p=0.983192

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               685-754, + strand, RNAmicro p=0.983818

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               685-754, + strand, RNAmicro p=0.983818

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014647, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014647, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-1778, gnl|bosTau2|chr25 (16173129-16171382)
               

               
               7-1778, gnl|Hg17|chr16 (15597649-15595943)
               

               
               7-1778, gnl|Mm7|chr16 (13657665-13655889)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1778, gnl|bosTau2|chr25 (16173129-16171382)
               

               
               7-1778, gnl|Hg17|chr16 (15597649-15595943)
               

               
               7-1778, gnl|Mm7|chr16 (13657665-13655889)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cki (0.495704)
               

               
               sme (0.305437)
               

               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               cut (0.169924)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.495704)
               

               
               sme (0.305437)
               

               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               cut (0.169924)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	401-558, + strand, RNAz p=0.999236
	739-930, - strand, RNAz p=0.656147
	971-1103, - strand, RNAz p=0.983192

	7-1778, gnl\|bosTau2\|chr25 (16173129-16171382)
	7-1778, gnl\|Hg17\|chr16 (15597649-15595943)
	7-1778, gnl\|Mm7\|chr16 (13657665-13655889)

	cki (0.495704)
	sme (0.305437)
	pan (0.23596)
	aor (0.195274)
	cmu (0.186393)
	cut (0.169924)
	sug (0.127291)
	thg (0.126791)
	eep (0.122564)
	eru (0.120048)
	ebs (0.118301)
	ecc (0.115035)