Ss1.1-Pig4-TMW8041M05.3
|
AGCCCGGTCCGCGAGCAGCGGCGGCGGCGGGAGGGACGATGAGCGGTGCGGCGCGGGCGG
GCCCGGCCCGGCTCGCCGCGCTCGCGCTGCTGACCTGCAGCCTGTGGCCGGCGCGGGCTG
ATAACGCGAGCCAGGAATACTACACGGCGCTCATCAATGTGACCGTGCAGGAGCCCGGCC
GCGGCTCCCCGCTCACGTTCCGCATCGACCGCGGGCGCTACGGGCTCGACTCGCCTAAGG
CCGAGGTCCGCGGTCAGGTGCTGGCACCGCTGCCCATCCATGGAGTTGCTGATCATCTGG
GCTGTGACCCTCAAACACGGTTCTTTGTCCCTCCAAACACCAAACAGTGGATTGCTTTGC
TGCAGAGGGGAAATTGCACATTTAAAGAGAAAATATCACGGGCTGCTTTCCACAATGCAG
TTGCTGTAGTCATCTACAATAATAAATCCAAAGAGGAACCAGTCACCATGACTCATCCAG
GCACTGGAGATATTATTGCTGTCATGATTACAGAATTGAGGGGTAAAGATATTTTGAGTT
ATCTGGAGAAAAACATCTCTGTTCAAATGACAATAGCTGTTGGAACTCGAATGCCGCCAA
AGAACTTCAGCCGTGGCTCTCTAGTCTTCGTGTCAATATCCTTTATTGTTTTGATGATTA
TTTCTTCAGCATGGCTTATATTCTACTTCATTCAGAAGATCAGATACACAAATGCCCGGG
ACAGAAACCAGCGTCGTCTTGGAGATGCAGCCAAGAAAGCCATCAGCAAATTGACAACCA
GAACAGTCAAAAAGGGTGATAAGGAAACAGACCCAGACTTTGATCACTGTGCAGTCTGCA
TAGAGAGCTATAAGCAGAATGATGTTGTCCGGATTCTCCCCTGCAAGCATGTTTTCCACA
AATCCTGTGTTGATCCCTGGCTTAGTGAACATTGTACCTGTCCTATGTGCAAACTTAATA
TCTTGAAGGCCCTGGGAATTGTGCCAAATTTGCCATGTACAGATAACGTAGCATTTGATA
TGGAAAGGCTCACCAGAACCCAAGCAGTTAACCGAAGATCAGCCCTAGGTGACCTCGCCA
GTGACAACTCCCTTGGCCTGGAGCCACTTCGAACTTCGGGGATCTCGCCTCTTCCTCAGG
ATGGGGAGCTCACTCCTAGAACGGGAGAGATCAACATTGCAGTAACAAAAGAATGGTTTA
TTATTGCCAGTTTTGGCCTCCTCAGTGCTCTCACACTCTGCTACATGATCATCAGAGCCA
CAGCTAGCTTGAATGCTAATGAGGTAGAATGGTTTTGAAGAAGGAAAAAACTGCTTTCTG
ACTGATTGCCTTGAAGGAAAAAAGAACCTATTTTTGTGCATCATTTACCAATCATGCCAC
ACAAGCATTTATTTTTAGTACATTTTATTTTTTCATAAAATTGCTAATGCCAAAGCTTTG
TATTAAAATAAATAAATAATAAAATTAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGCCCGGTCCGCGAGCAGCGGCGGCGGCGGGAGGGACGATGAGCGGTGCGGCGCGGGCGG
GCCCGGCCCGGCTCGCCGCGCTCGCGCTGCTGACCTGCAGCCTGTGGCCGGCGCGGGCTG
ATAACGCGAGCCAGGAATACTACACGGCGCTCATCAATGTGACCGTGCAGGAGCCCGGCC
GCGGCTCCCCGCTCACGTTCCGCATCGACCGCGGGCGCTACGGGCTCGACTCGCCTAAGG
CCGAGGTCCGCGGTCAGGTGCTGGCACCGCTGCCCATCCATGGAGTTGCTGATCATCTGG
GCTGTGACCCTCAAACACGGTTCTTTGTCCCTCCAAACACCAAACAGTGGATTGCTTTGC
TGCAGAGGGGAAATTGCACATTTAAAGAGAAAATATCACGGGCTGCTTTCCACAATGCAG
TTGCTGTAGTCATCTACAATAATAAATCCAAAGAGGAACCAGTCACCATGACTCATCCAG
GCACTGGAGATATTATTGCTGTCATGATTACAGAATTGAGGGGTAAAGATATTTTGAGTT
ATCTGGAGAAAAACATCTCTGTTCAAATGACAATAGCTGTTGGAACTCGAATGCCGCCAA
AGAACTTCAGCCGTGGCTCTCTAGTCTTCGTGTCAATATCCTTTATTGTTTTGATGATTA
TTTCTTCAGCATGGCTTATATTCTACTTCATTCAGAAGATCAGATACACAAATGCCCGGG
ACAGAAACCAGCGTCGTCTTGGAGATGCAGCCAAGAAAGCCATCAGCAAATTGACAACCA
GAACAGTCAAAAAGGGTGATAAGGAAACAGACCCAGACTTTGATCACTGTGCAGTCTGCA
TAGAGAGCTATAAGCAGAATGATGTTGTCCGGATTCTCCCCTGCAAGCATGTTTTCCACA
AATCCTGTGTTGATCCCTGGCTTAGTGAACATTGTACCTGTCCTATGTGCAAACTTAATA
TCTTGAAGGCCCTGGGAATTGTGCCAAATTTGCCATGTACAGATAACGTAGCATTTGATA
TGGAAAGGCTCACCAGAACCCAAGCAGTTAACCGAAGATCAGCCCTAGGTGACCTCGCCA
GTGACAACTCCCTTGGCCTGGAGCCACTTCGAACTTCGGGGATCTCGCCTCTTCCTCAGG
ATGGGGAGCTCACTCCTAGAACGGGAGAGATCAACATTGCAGTAACAAAAGAATGGTTTA
TTATTGCCAGTTTTGGCCTCCTCAGTGCTCTCACACTCTGCTACATGATCATCAGAGCCA
CAGCTAGCTTGAATGCTAATGAGGTAGAATGGTTTTGAAGAAGGAAAAAACTGCTTTCTG
ACTGATTGCCTTGAAGGAAAAAAGAACCTATTTTTGTGCATCATTTACCAATCATGCCAC
ACAAGCATTTATTTTTAGTACATTTTATTTTTTCATAAAATTGCTAATGCCAAAGCTTTG
TATTAAAATAAATAAATAATAAAATTAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|7677054|gb|AAF67007.1| |
Protein identifier
|
gi|7677054|gb|AAF67007.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
49-288, gnl|bosTau2|chr28 (24595519-24595759) |
|
49-288, gnl|Hg17|chr5 (179431298-179431059) |
|
49-288, gnl|Mm7|chr11 (49982168-49982407) |
| |
|
478-731, gnl|bosTau2|chr28 (24660868-24661121) |
|
478-731, gnl|canFam2|chr11 (4707467-4707190) |
|
478-731, gnl|danRer3|chr14 (60221798-60221522) |
|
478-731, gnl|dasNov1|scaffold_58886 (12639-12362) |
|
478-731, gnl|echTel1|scaffold_211651 (6177-5894) |
|
478-731, gnl|galGal2|chr13 (12354047-12353785) |
|
478-731, gnl|hg17|chr5 (179372646-179372921) |
|
478-731, gnl|Hg17|chr5 (179372920-179372667) |
|
478-731, gnl|loxAfr1|scaffold_172063 (827-550) |
|
478-731, gnl|mm7|chr11 (50028197-50027926) |
|
478-731, gnl|Mm7|chr11 (50027925-50028178) |
|
478-731, gnl|monDom2|scaffold_6 (15147867-15148143) |
|
478-731, gnl|oryCun1|scaffold_206886 (6682-6405) |
|
478-731, gnl|panTro1|chr4 (186901426-186901701) |
|
478-731, gnl|rheMac2|chr6 (176696638-176696913) |
|
478-731, gnl|rn3|chr19 (26829169-26829427) |
|
478-731, gnl|tetNig1|chr18 (6625692-6625967) |
|
478-731, gnl|xenTro1|scaffold_261 (949634-949893) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
49-288, gnl|bosTau2|chr28 (24595519-24595759) |
|
49-288, gnl|Hg17|chr5 (179431298-179431059) |
|
49-288, gnl|Mm7|chr11 (49982168-49982407) |
| |
|
478-731, gnl|bosTau2|chr28 (24660868-24661121) |
|
478-731, gnl|canFam2|chr11 (4707467-4707190) |
|
478-731, gnl|danRer3|chr14 (60221798-60221522) |
|
478-731, gnl|dasNov1|scaffold_58886 (12639-12362) |
|
478-731, gnl|echTel1|scaffold_211651 (6177-5894) |
|
478-731, gnl|galGal2|chr13 (12354047-12353785) |
|
478-731, gnl|hg17|chr5 (179372646-179372921) |
|
478-731, gnl|Hg17|chr5 (179372920-179372667) |
|
478-731, gnl|loxAfr1|scaffold_172063 (827-550) |
|
478-731, gnl|mm7|chr11 (50028197-50027926) |
|
478-731, gnl|Mm7|chr11 (50027925-50028178) |
|
478-731, gnl|monDom2|scaffold_6 (15147867-15148143) |
|
478-731, gnl|oryCun1|scaffold_206886 (6682-6405) |
|
478-731, gnl|panTro1|chr4 (186901426-186901701) |
|
478-731, gnl|rheMac2|chr6 (176696638-176696913) |
|
478-731, gnl|rn3|chr19 (26829169-26829427) |
|
478-731, gnl|tetNig1|chr18 (6625692-6625967) |
|
478-731, gnl|xenTro1|scaffold_261 (949634-949893) |
|
cmu (2.05033) |
|
tra (1.35401) |
|
sto (1.25877) |
|
tbr (1.23343) |
|
ste (1.21687) |
|
mga (1.12144) |
|
sag (1.09629) |
|
fat (1.03199) |
|
spl (0.859107) |
|
clu (0.837521) |
|
cbe (0.717703) |
|
fty (0.703359) |
|
spc (0.680195) |
|
cut (0.679694) |
|
ldo (0.679018) |
|
cki (0.660939) |
|
ova (0.645661) |
|
sug (0.636456) |
|
lyg (0.532411) |
|
isp (0.451128) |
|
che (0.408942) |
|
ssp (0.406559) |
|
aor (0.390549) |
|
kid (0.389206) |
|
mgm (0.360685) |
|
cje (0.330469) |
|
sme (0.305437) |
|
ski (0.29347) |
|
liv (0.292569) |
|
lin (0.291206) |
|
hyp (0.285673) |
|
bla (0.248694) |
|
med (0.232504) |
|
mgp (0.230681) |
|
nms (0.213858) |
|
tes (0.207814) |
|
nlu (0.191681) |
|
gul (0.177588) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
cli (0.152812) |
|
cag (0.151194) |
|
bfe (0.149858) |
|
pty (0.142714) |
|
csk (0.140746) |
|
pla (0.133672) |
|
ret (0.128733) |
|
pgl (0.118483) |
|
cty (0.10408) |
|
cmu (2.05033) |
|
tra (1.35401) |
|
sto (1.25877) |
|
tbr (1.23343) |
|
ste (1.21687) |
|
mga (1.12144) |
|
sag (1.09629) |
|
fat (1.03199) |
|
spl (0.859107) |
|
clu (0.837521) |
|
cbe (0.717703) |
|
fty (0.703359) |
|
spc (0.680195) |
|
cut (0.679694) |
|
ldo (0.679018) |
|
cki (0.660939) |
|
ova (0.645661) |
|
sug (0.636456) |
|
lyg (0.532411) |
|
isp (0.451128) |
|
che (0.408942) |
|
ssp (0.406559) |
|
aor (0.390549) |
|
kid (0.389206) |
|
mgm (0.360685) |
|
cje (0.330469) |
|
sme (0.305437) |
|
ski (0.29347) |
|
liv (0.292569) |
|
lin (0.291206) |
|
hyp (0.285673) |
|
bla (0.248694) |
|
med (0.232504) |
|
mgp (0.230681) |
|
nms (0.213858) |
|
tes (0.207814) |
|
nlu (0.191681) |
|
gul (0.177588) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
cli (0.152812) |
|
cag (0.151194) |
|
bfe (0.149858) |
|
pty (0.142714) |
|
csk (0.140746) |
|
pla (0.133672) |
|
ret (0.128733) |
|
pgl (0.118483) |
|
cty (0.10408) |
