Non-Coding RNA Search

Ss1.1-Pig4-TMW8041N02.3

Sequence:


               
               CCCCGGCGTGAAGATAATGCTCTACCTGTGCCCACTGGCACCCTCCTGCCTGGGGGGCCT
GGAGGCAGTATTAGCTCCAGGCCGGAGGCTCAGATGCCCAAAGGGCAGAGCAGCCCAGGG
GGCTGTGCCTGTCCCAGTCTGGCTTCTCCGGCCCCTCGGGCAGCAGCGCCTCCTCGGGCA
GCCCGGGGCCCCACGCCGCGCACGGAGGAGGCCGCCTGGGCTGCCATGGCCCTGACCTTC
CTGTTGGTGCTGCTCACCCTGGCCACGCTCTGCACTCGGCTGCACCGGAACTTCAGGCGA
GGGGAGAGCATCTACTGGGAACCCACAGTGGACAGCCGGGACACAGTGGCTGCTGTGCTG
AAGCGGAGGCTGCTGATGCCCCCTCGTCGGGTCAAGCGCTCCCGCCGGAGACCCCTCCTC
CCACCCACGCCGGACAGCGGCCCAGATGGGGACAGCTCCGAGTGACCTGCCCCACCCCTG
CCACTGTGGCAGGTCTGGCTCCTCCCGCTGGGAGGCACTGCGCACAAGGTCGCCCCCTGG
TGGCCCGATGGAGCAGTCCTGCCTAAGCCCGCGAGGGGGCTGGTCCGGTGTGTGGTTTGC
TGGGAGGGGGTGGGGGCGGGGGCGTTGGAATGCGAAGGAGCCTTTTCAGTCTCCGTTGTG
AAAACTCTGTTTTCCTTATTAAATTATTTTAATAGAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCGGCGTGAAGATAATGCTCTACCTGTGCCCACTGGCACCCTCCTGCCTGGGGGGCCT
GGAGGCAGTATTAGCTCCAGGCCGGAGGCTCAGATGCCCAAAGGGCAGAGCAGCCCAGGG
GGCTGTGCCTGTCCCAGTCTGGCTTCTCCGGCCCCTCGGGCAGCAGCGCCTCCTCGGGCA
GCCCGGGGCCCCACGCCGCGCACGGAGGAGGCCGCCTGGGCTGCCATGGCCCTGACCTTC
CTGTTGGTGCTGCTCACCCTGGCCACGCTCTGCACTCGGCTGCACCGGAACTTCAGGCGA
GGGGAGAGCATCTACTGGGAACCCACAGTGGACAGCCGGGACACAGTGGCTGCTGTGCTG
AAGCGGAGGCTGCTGATGCCCCCTCGTCGGGTCAAGCGCTCCCGCCGGAGACCCCTCCTC
CCACCCACGCCGGACAGCGGCCCAGATGGGGACAGCTCCGAGTGACCTGCCCCACCCCTG
CCACTGTGGCAGGTCTGGCTCCTCCCGCTGGGAGGCACTGCGCACAAGGTCGCCCCCTGG
TGGCCCGATGGAGCAGTCCTGCCTAAGCCCGCGAGGGGGCTGGTCCGGTGTGTGGTTTGC
TGGGAGGGGGTGGGGGCGGGGGCGTTGGAATGCGAAGGAGCCTTTTCAGTCTCCGTTGTG
AAAACTCTGTTTTCCTTATTAAATTATTTTAATAGAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9NTB5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NTB5_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               14-172, + strand, RNAz p=0.977791

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               14-172, + strand, RNAz p=0.977791

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               96-232, + strand, RNAmicro p=0.913127

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               96-232, + strand, RNAmicro p=0.913127

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-355, gnl|bosTau2|chr19 (14065888-14065547)
               

               
               14-355, gnl|Hg17|chr17 (24923503-24923844)
               

               
               14-355, gnl|Mm7|chr11 (77590365-77590029)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-355, gnl|bosTau2|chr19 (14065888-14065547)
               

               
               14-355, gnl|Hg17|chr17 (24923503-24923844)
               

               
               14-355, gnl|Mm7|chr11 (77590365-77590029)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ese (0.253004)
               

               
               fli (0.202881)
               

               
               fty (0.17584)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.253004)
               

               
               fli (0.202881)
               

               
               fty (0.17584)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)

	14-355, gnl\|bosTau2\|chr19 (14065888-14065547)
	14-355, gnl\|Hg17\|chr17 (24923503-24923844)
	14-355, gnl\|Mm7\|chr11 (77590365-77590029)

	ese (0.253004)
	fli (0.202881)
	fty (0.17584)
	pty (0.142714)
	lnt (0.142308)
	pla (0.133672)