Ss1.1-Pig4-TMW8041N05.3
|
ATATTGGTAAAGTATTGGGACCAAGGTAGAACCGAATTCCCTGTTCTCGCGGGAGCTGGA
GGTGGGACTGCCACGTCCGAGCAAACCGGGAAAGGAGAGGATCCCGGAGCCGGTGAGAAT
AGCCCGCTTTTCTCTGCTGTCCTTTCCAAGCCTTTTTTCTCAACTAGTGGGCCATAGAGA
CGAGGGCCCAGAGAGTCCAAGAGTGGAGGATCAAAGCCTAGAGCGGTATCCCGGGGGCCC
TACATCCGGGAAGGGGTTCGGGATAAAGAAAACGAATCTTGGGGACAATGTGGGTGGGGA
CAGAATGGGACGGGGAAGCGGTCCATAGACGTGGACAGAGGGCGCTATCGGAGTAAAGCG
GACCCTGTATAGGTATACAGTTGAGGGTCAAGTGGAGTCATTGTCTGTGTCCCTCTGGTC
AGCGTGATGGCCAGAGGCCTGGGGGCCCCCCACAGGGTGGCCGTGGGACTGCTGACGTGG
GCAGCCTTGGGGCTGCTAGTGGCCGGACACGGGGGTCATGGCGACCTGTACGAAGACCTG
CAGGAGGACTTGCATGGCCACAGCCACAGGCATTCACATGAGGATTTCCACCATGGACAC
AGCCATGCCCATGGCCATGGCCATACTCATGAGAGCATCTGGCATGGGCATACCCACGGT
CACGATCATGGACATTCACATGAGGATTTGCACCATGGCCATATTCATGGCGACTCCCAT
GAGAGCCTCTACCACCCAGGACACGGACATGACCATGAGCACAGCCATGGAGGCTATGGG
GAATCTGGGGCTCCAGGCATCAAGCAAGACTTGGACACTGTCACTCTCTGGGCCTATGCA
CTAGGGGCCACAGTGCTCATCTCTGCAGCTCCATTTTTCGTCCTCTTCCTTATCCCGGTG
GAGTCCAACTCACCTCGGCACCGCTCTCTGCTCCAGATCCTGCTGAGTTTTGCTTCGGGT
GGGCTCTTGGGAGATGCCTTCCTGCACCTCATTCCTCATGCTCTGGAACCCCATTCTCAC
CACCCTCTGGAGCAGCCCGGACACGGACATTCCCACAGTGGCCAGGGCCCCATTCTGTCT
GTGGGACTGTGGGTCCTCAGTGGAATTGTCGCCTTTCTTGTGGTGGAGAAATTTGTGAGA
CACGTGAAAGGAGGACATGGACACAGTCACGGACATGGACATGCTCACGGTCACACGCAT
GGAGGTCATGGACATGGAAGACAGGAGTGTCCTTCAAAGGAAAAGCAGAGCTCAGAGGAA
GAAGAAAAGGAAGCAGGGGCATCGAGGAAGAGAAGAGGAGGGAGCACAAGGCCCAAAGAT
GGGCCAGTGAGACCTCAGCATTCTGGAGAGGAAAAAGCAGGGTCAGACTTGCGTGTGTCA
GGGTATCTGAATCTGGCTGCTGACCTGGCACACAACTTCACGGATGGTCTAGCTATTGGT
GCTTCATTTCGAGGAGGTCGGGGGCTCGGGATCCTGACCACGATGACTGTGCTGCTACAT
GAAGTGCCCCATGAAGTGGGGGACTTTGCCATCTTGGTCCAGTCTGGCTGCAGCAAAAAG
CAGGCGATGCGTCTACAACTTCTGACGGCAGTAGGGGCACTGGCAGGCACAGCCTTTGCC
CTCCTAACCGAAGGAGGGGCAGCGGGCAGTGAAGTTGCAGGTGGCACAGGTCCTGGCTGG
GTTCTGCCATTCACTGCAGGTGGCTTTATCTATGTAGCAACGGTTTCGGTCTTGCCTGAG
CTGTTGAGGGAGGCATCACCATTGCAGTCACTTCTGGAGGTGTTGGGGCTGCTGGGGGGA
GTGGTCATGATGGTGCTGATTGCCCACCTCGAGTGAGAGGCAGGGTAAACCACCCCCACT
CCAGCCCCAAAGTCCTAAGCCCTTCAGGTTAGGGGTCTGGAGGTTGGGGGCCCTGACCTC
GGATATCTGCCAGAGGAAGGAGTTGTATCCTAGGGAAGTGGTGACTTTGGCTTAAAGATC
TTCAAGATTTGGCTCTAGAGGTGGGGTTGACCAGCCCAGTGGGACCACAGTTGGGTCTGG
GATGCTAAGTGGAACCATGAAGAAGGTTGGAAGAGAGAAGAGTTATGGCAGCCTAGCGCT
TGTCTCCCACCCCCACCTGTTCACAGGGGACCAAGCTGCCACACAGGCTTCTCCAAGGTC
TACCTCTCTCCCACCTGTTGGTGAAGAAGACTTCAGGGAAGACCCGGGCCCTAGACAAAA
GGGACAGCAGGAGAAGTCAGGGATAAATGTCAATTGTGTGTCCTGATTTGGGAGTGATTG
TGGGGGAGGGGGGCTAGTTGTTAATCTCATGGCCTGATTTTTTTGTTTCTATTCTTTTAT
ATCAATGTTTGGATCGGGGAGGAGGGGTGGTGAACGGAAATAAAGTCCTCGGATCTTCCG
TAGATGTCAGTG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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ATATTGGTAAAGTATTGGGACCAAGGTAGAACCGAATTCCCTGTTCTCGCGGGAGCTGGA
GGTGGGACTGCCACGTCCGAGCAAACCGGGAAAGGAGAGGATCCCGGAGCCGGTGAGAAT
AGCCCGCTTTTCTCTGCTGTCCTTTCCAAGCCTTTTTTCTCAACTAGTGGGCCATAGAGA
CGAGGGCCCAGAGAGTCCAAGAGTGGAGGATCAAAGCCTAGAGCGGTATCCCGGGGGCCC
TACATCCGGGAAGGGGTTCGGGATAAAGAAAACGAATCTTGGGGACAATGTGGGTGGGGA
CAGAATGGGACGGGGAAGCGGTCCATAGACGTGGACAGAGGGCGCTATCGGAGTAAAGCG
GACCCTGTATAGGTATACAGTTGAGGGTCAAGTGGAGTCATTGTCTGTGTCCCTCTGGTC
AGCGTGATGGCCAGAGGCCTGGGGGCCCCCCACAGGGTGGCCGTGGGACTGCTGACGTGG
GCAGCCTTGGGGCTGCTAGTGGCCGGACACGGGGGTCATGGCGACCTGTACGAAGACCTG
CAGGAGGACTTGCATGGCCACAGCCACAGGCATTCACATGAGGATTTCCACCATGGACAC
AGCCATGCCCATGGCCATGGCCATACTCATGAGAGCATCTGGCATGGGCATACCCACGGT
CACGATCATGGACATTCACATGAGGATTTGCACCATGGCCATATTCATGGCGACTCCCAT
GAGAGCCTCTACCACCCAGGACACGGACATGACCATGAGCACAGCCATGGAGGCTATGGG
GAATCTGGGGCTCCAGGCATCAAGCAAGACTTGGACACTGTCACTCTCTGGGCCTATGCA
CTAGGGGCCACAGTGCTCATCTCTGCAGCTCCATTTTTCGTCCTCTTCCTTATCCCGGTG
GAGTCCAACTCACCTCGGCACCGCTCTCTGCTCCAGATCCTGCTGAGTTTTGCTTCGGGT
GGGCTCTTGGGAGATGCCTTCCTGCACCTCATTCCTCATGCTCTGGAACCCCATTCTCAC
CACCCTCTGGAGCAGCCCGGACACGGACATTCCCACAGTGGCCAGGGCCCCATTCTGTCT
GTGGGACTGTGGGTCCTCAGTGGAATTGTCGCCTTTCTTGTGGTGGAGAAATTTGTGAGA
CACGTGAAAGGAGGACATGGACACAGTCACGGACATGGACATGCTCACGGTCACACGCAT
GGAGGTCATGGACATGGAAGACAGGAGTGTCCTTCAAAGGAAAAGCAGAGCTCAGAGGAA
GAAGAAAAGGAAGCAGGGGCATCGAGGAAGAGAAGAGGAGGGAGCACAAGGCCCAAAGAT
GGGCCAGTGAGACCTCAGCATTCTGGAGAGGAAAAAGCAGGGTCAGACTTGCGTGTGTCA
GGGTATCTGAATCTGGCTGCTGACCTGGCACACAACTTCACGGATGGTCTAGCTATTGGT
GCTTCATTTCGAGGAGGTCGGGGGCTCGGGATCCTGACCACGATGACTGTGCTGCTACAT
GAAGTGCCCCATGAAGTGGGGGACTTTGCCATCTTGGTCCAGTCTGGCTGCAGCAAAAAG
CAGGCGATGCGTCTACAACTTCTGACGGCAGTAGGGGCACTGGCAGGCACAGCCTTTGCC
CTCCTAACCGAAGGAGGGGCAGCGGGCAGTGAAGTTGCAGGTGGCACAGGTCCTGGCTGG
GTTCTGCCATTCACTGCAGGTGGCTTTATCTATGTAGCAACGGTTTCGGTCTTGCCTGAG
CTGTTGAGGGAGGCATCACCATTGCAGTCACTTCTGGAGGTGTTGGGGCTGCTGGGGGGA
GTGGTCATGATGGTGCTGATTGCCCACCTCGAGTGAGAGGCAGGGTAAACCACCCCCACT
CCAGCCCCAAAGTCCTAAGCCCTTCAGGTTAGGGGTCTGGAGGTTGGGGGCCCTGACCTC
GGATATCTGCCAGAGGAAGGAGTTGTATCCTAGGGAAGTGGTGACTTTGGCTTAAAGATC
TTCAAGATTTGGCTCTAGAGGTGGGGTTGACCAGCCCAGTGGGACCACAGTTGGGTCTGG
GATGCTAAGTGGAACCATGAAGAAGGTTGGAAGAGAGAAGAGTTATGGCAGCCTAGCGCT
TGTCTCCCACCCCCACCTGTTCACAGGGGACCAAGCTGCCACACAGGCTTCTCCAAGGTC
TACCTCTCTCCCACCTGTTGGTGAAGAAGACTTCAGGGAAGACCCGGGCCCTAGACAAAA
GGGACAGCAGGAGAAGTCAGGGATAAATGTCAATTGTGTGTCCTGATTTGGGAGTGATTG
TGGGGGAGGGGGGCTAGTTGTTAATCTCATGGCCTGATTTTTTTGTTTCTATTCTTTTAT
ATCAATGTTTGGATCGGGGAGGAGGGGTGGTGAACGGAAATAAAGTCCTCGGATCTTCCG
TAGATGTCAGTG
|
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1-116, - strand, RNAz p=0.767569 |
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555-810, - strand, RNAz p=0.998237 |
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1060-1178, + strand, RNAz p=0.595836 |
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1561-1719, - strand, RNAz p=0.739642 |
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1800-1957, + strand, RNAz p=0.973421 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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1-116, - strand, RNAz p=0.767569 |
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555-810, - strand, RNAz p=0.998237 |
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1060-1178, + strand, RNAz p=0.595836 |
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1561-1719, - strand, RNAz p=0.739642 |
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1800-1957, + strand, RNAz p=0.973421 |
Human gene identifier and UTR site,
human gene reading direction
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1-838, gnl|bosTau2|chr23 (5558664-5557827) |
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1-838, gnl|Hg17|chr6 (33276581-33277412) |
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1-838, gnl|Mm7|chr17 (32110099-32109260) |
| |
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1060-1225, gnl|bosTau2|chr23 (5557226-5557061) |
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1060-1225, gnl|canFam2|chr12 (5668636-5668875) |
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1060-1225, gnl|danRer3|chr19 (16248007-16248262) |
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1060-1225, gnl|dasNov1|scaffold_39224 (1420-1198) |
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1060-1225, gnl|fr1|chrUn (296545203-296545465) |
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1060-1225, gnl|hg17|chr6 (33277930-33278151) |
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1060-1225, gnl|Hg17|chr6 (33278017-33278182) |
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1060-1225, gnl|loxAfr1|scaffold_64283 (3092-2881) |
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1060-1225, gnl|mm7|chr17 (32108768-32108560) |
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1060-1225, gnl|Mm7|chr17 (32108692-32108527) |
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1060-1225, gnl|monDom2|scaffold_42 (15258455-15258220) |
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1060-1225, gnl|oryCun1|scaffold_166833 (13250-13461) |
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1060-1225, gnl|panTro1|chr5 (33723136-33723354) |
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1060-1225, gnl|rheMac2|chr4 (32916592-32916813) |
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1060-1225, gnl|rn3|chr20 (4962737-4962957) |
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1060-1225, gnl|tetNig1|chrUn_random (10492244-10492035) |
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1060-1225, gnl|xenTro1|scaffold_726 (385313-385098) |
| |
|
1561-2401, gnl|bosTau2|chr23 (5555245-5554381) |
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1561-2401, gnl|Hg17|chr6 (33279293-33280188) |
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1561-2401, gnl|Mm7|chr17 (32107508-32106713) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-838, gnl|bosTau2|chr23 (5558664-5557827) |
|
1-838, gnl|Hg17|chr6 (33276581-33277412) |
|
1-838, gnl|Mm7|chr17 (32110099-32109260) |
| |
|
1060-1225, gnl|bosTau2|chr23 (5557226-5557061) |
|
1060-1225, gnl|canFam2|chr12 (5668636-5668875) |
|
1060-1225, gnl|danRer3|chr19 (16248007-16248262) |
|
1060-1225, gnl|dasNov1|scaffold_39224 (1420-1198) |
|
1060-1225, gnl|fr1|chrUn (296545203-296545465) |
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1060-1225, gnl|hg17|chr6 (33277930-33278151) |
|
1060-1225, gnl|Hg17|chr6 (33278017-33278182) |
|
1060-1225, gnl|loxAfr1|scaffold_64283 (3092-2881) |
|
1060-1225, gnl|mm7|chr17 (32108768-32108560) |
|
1060-1225, gnl|Mm7|chr17 (32108692-32108527) |
|
1060-1225, gnl|monDom2|scaffold_42 (15258455-15258220) |
|
1060-1225, gnl|oryCun1|scaffold_166833 (13250-13461) |
|
1060-1225, gnl|panTro1|chr5 (33723136-33723354) |
|
1060-1225, gnl|rheMac2|chr4 (32916592-32916813) |
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1060-1225, gnl|rn3|chr20 (4962737-4962957) |
|
1060-1225, gnl|tetNig1|chrUn_random (10492244-10492035) |
|
1060-1225, gnl|xenTro1|scaffold_726 (385313-385098) |
| |
|
1561-2401, gnl|bosTau2|chr23 (5555245-5554381) |
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1561-2401, gnl|Hg17|chr6 (33279293-33280188) |
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1561-2401, gnl|Mm7|chr17 (32107508-32106713) |
|
fce (0.543183) |
|
fbs (0.526039) |
|
hyp (0.42851) |
|
pty (0.428143) |
|
cov (0.396458) |
|
nep (0.36785) |
|
cut (0.339847) |
|
nje (0.33184) |
|
cki (0.330469) |
|
nca (0.273748) |
|
eep (0.245128) |
|
ece (0.229305) |
|
jca (0.22792) |
|
fli (0.202881) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
col (0.195008) |
|
fty (0.17584) |
|
fhi (0.169578) |
|
cje (0.165235) |
|
nco (0.161734) |
|
fat (0.147427) |
|
liv (0.146284) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
che (0.136314) |
|
eru (0.120048) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
fce (0.543183) |
|
fbs (0.526039) |
|
hyp (0.42851) |
|
pty (0.428143) |
|
cov (0.396458) |
|
nep (0.36785) |
|
cut (0.339847) |
|
nje (0.33184) |
|
cki (0.330469) |
|
nca (0.273748) |
|
eep (0.245128) |
|
ece (0.229305) |
|
jca (0.22792) |
|
fli (0.202881) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
col (0.195008) |
|
fty (0.17584) |
|
fhi (0.169578) |
|
cje (0.165235) |
|
nco (0.161734) |
|
fat (0.147427) |
|
liv (0.146284) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
che (0.136314) |
|
eru (0.120048) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
