Non-Coding RNA Search

Ss1.1-Pig4-TMW8041N17.5

Sequence:


               
               TAAGCCCACCATTGATGAGAAAATTCAGCTTGTACCTAAAGCACAGCTGGGCAGTTGGGG
GAAAGGTAGCAGTGGTGGAGCAAAAGCAAGTGAGACTGATGCCTTACGGTCAAGTGCTTC
CAGTTTAAACAGATTCTCTGCTTTGCAACCTCCAGCACCCTCGGGATCTACATCATCCAC
ACCTTTAGAGTTTGATTCCCGTCGGACCTTAACCAGTCGTGGAAGCATGGGCAGGGAGAA
GAATGACAAGCCCCTCCCATCTGCAACAGCTCGTCCAAACACTTTCATGAGAGGTGGCAG
CAGTAAAGACCTGTTAGACAATCAGTCTCAAGAAGAGCAAAGGAGGGAGATGCTGGAGAC
CGTGAAGCAGCTTACAGGAGGCATGGACATGGAGAGGAGCAGTGCTGAGACTGACCGGAA
CAGAACCAGGGAGTCAGTAGTGAAACCAGAAATTCCAGCAACGTCAGCCCCTGACAAGCC
TGCATTGTCAGAGGAGGAAATGGAAAGGAAGTCCAAATCTATCATTGATGAATTTCTACA
CATTAATGATTTCAAGGAAGCCATGCAGTGTGTAGAAGAGCTGAATGCTCAGGGCCTGCT
ACATGTGTTCGTGAGAATGGGAGTGGAGTCCACCCTGGAAAGGAGCCAGATAACCAGGGA
TCACATGGGCCAATTACTGTATCAGCTGGTGCAGTCAGAAAAACTCAGCAAGCAGGACTT
CTTCAAAGGTTTTTCAGAAACATTGGAATTGGCAGATGACATGGCCATTGATATTCCCCA
TATTTGGTTGTACCTTGCTGAATTGGTGACCCCCATGTTAAAAGAAGGCGGAATCTCCAT
GAGAGAACTTATCATAGAGTTTACCAAACCTTTAATTCCTGTCGGAAGAGCTGGAGTCTT
GCTTTCTGAAATATTACACCTTCTATGCAAACAAATGAGCCATAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGCCCACCATTGATGAGAAAATTCAGCTTGTACCTAAAGCACAGCTGGGCAGTTGGGG
GAAAGGTAGCAGTGGTGGAGCAAAAGCAAGTGAGACTGATGCCTTACGGTCAAGTGCTTC
CAGTTTAAACAGATTCTCTGCTTTGCAACCTCCAGCACCCTCGGGATCTACATCATCCAC
ACCTTTAGAGTTTGATTCCCGTCGGACCTTAACCAGTCGTGGAAGCATGGGCAGGGAGAA
GAATGACAAGCCCCTCCCATCTGCAACAGCTCGTCCAAACACTTTCATGAGAGGTGGCAG
CAGTAAAGACCTGTTAGACAATCAGTCTCAAGAAGAGCAAAGGAGGGAGATGCTGGAGAC
CGTGAAGCAGCTTACAGGAGGCATGGACATGGAGAGGAGCAGTGCTGAGACTGACCGGAA
CAGAACCAGGGAGTCAGTAGTGAAACCAGAAATTCCAGCAACGTCAGCCCCTGACAAGCC
TGCATTGTCAGAGGAGGAAATGGAAAGGAAGTCCAAATCTATCATTGATGAATTTCTACA
CATTAATGATTTCAAGGAAGCCATGCAGTGTGTAGAAGAGCTGAATGCTCAGGGCCTGCT
ACATGTGTTCGTGAGAATGGGAGTGGAGTCCACCCTGGAAAGGAGCCAGATAACCAGGGA
TCACATGGGCCAATTACTGTATCAGCTGGTGCAGTCAGAAAAACTCAGCAAGCAGGACTT
CTTCAAAGGTTTTTCAGAAACATTGGAATTGGCAGATGACATGGCCATTGATATTCCCCA
TATTTGGTTGTACCTTGCTGAATTGGTGACCCCCATGTTAAAAGAAGGCGGAATCTCCAT
GAGAGAACTTATCATAGAGTTTACCAAACCTTTAATTCCTGTCGGAAGAGCTGGAGTCTT
GCTTTCTGAAATATTACACCTTCTATGCAAACAAATGAGCCATAAGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61820427|ref|XP_597565.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61820427|ref|XP_597565.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               215-437, gnl|bosTau2|chr2 (85811738-85811516)
               

               
               215-437, gnl|Hg17|chr1 (20923279-20923057)
               

               
               215-437, gnl|Mm7|chr4 (137561567-137561786)
               


               
               555-729, gnl|bosTau2|chr2 (85804375-85804201)
               

               
               555-729, gnl|Hg17|chr1 (20912829-20912655)
               

               
               555-729, gnl|Mm7|chr4 (137566485-137566659)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               215-437, gnl|bosTau2|chr2 (85811738-85811516)
               

               
               215-437, gnl|Hg17|chr1 (20923279-20923057)
               

               
               215-437, gnl|Mm7|chr4 (137561567-137561786)
               


               
               555-729, gnl|bosTau2|chr2 (85804375-85804201)
               

               
               555-729, gnl|Hg17|chr1 (20912829-20912655)
               

               
               555-729, gnl|Mm7|chr4 (137566485-137566659)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ldo (0.291008)
               

               
               tbr (0.154178)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.291008)
               

               
               tbr (0.154178)
               

               
               med (0.116252)

	215-437, gnl\|bosTau2\|chr2 (85811738-85811516)
	215-437, gnl\|Hg17\|chr1 (20923279-20923057)
	215-437, gnl\|Mm7\|chr4 (137561567-137561786)

	555-729, gnl\|bosTau2\|chr2 (85804375-85804201)
	555-729, gnl\|Hg17\|chr1 (20912829-20912655)
	555-729, gnl\|Mm7\|chr4 (137566485-137566659)