Ss1.1-Pig4-TMW8041N19.3
|
GGTGGTTTAGAGATTGAGTCACCGGACCGGTTGGCGGCATGGCAGCGATGTTTAGGCGAA
GCTGCAGGGTACTGAGAAGTCTTTCTCATTTTGGCTGGAGATCACAACATACAAAAGCTG
TCCCACAGTGTGAACCAGGATCAGGATTTAGTTTTGAGCTTACTGAACAGCAGAAAGAAT
TTCAAGCTACTGCTCGTAAATTTGCCAGGGAGGAAATAATCCCAGTTGCTGCAGAATATG
ATAGAACTGGCGAGTACCCTGTCCCACTACTTAAAAGAGCCTGGGAACTTGGTTTAATGA
ATACACACATTCCGGAAAGTTTTGGAGGTCTTGGACTTGGAATTATTGATAGCTGTTTAA
TTACTGAAGAACTGGCTTATGGATGTACAGGGGTTCAGACTGCTATTGAAGCAAATACTC
TGGGGCAAGTGCCCCTTATTATTGGTGGAAATTATCAACAACAAAAGAAATATTTGGGGA
GAATGACTGAGGAGCCATTGATGTGTGCCTATTGTGTAACAGAACCAGGAGCAGGCTCTG
ATGTAGCTGGGATAAAGACCAAAGCAGAAAAGAAAGGTGACGAGTATATTATTAATGGCC
AGAAGATGTGGATAACCAATGGAGGAAAAGCTAATTGGTATTTTTTATTGGCTCGTTCTG
ATCCGGATCCAAAGGCTCCTGCTAGTAAAGCCTTTACTGGATTTATTGTGGAAGCAGATA
CCCCAGGAGTGCAGATTGGAAGAAAGGAAATAAATATGGGCCAACGATGTTCAGATACAA
GAGGAATTGTCTTTGAAGATGTGAGAGTGCCTAAGGAAAATGTTTTAACTGGTGAGGGAG
CAGGTTTCAAAATTGCAATGGGAACTTTTGATAAAACCAGACCTCCGGTAGCAGCCGGTG
CTGTGGGACTCGCACAAAGAGCTTTGGATGAAGCTACCAAGTATGCCTTGGAGAGGAAAA
CTTTTGGAAAGCTGCTTGCAGAGCACCAAGGAATATCATTTTTGCTGGCTGACATGGCAA
TGAAAGTTGAACTAGCTAGATTGAGTTACCAGAGAGCAGCTTGGGAGATTGATTCTGGTC
GCCGAAATACCTATTATGCCTCTATTGCAAAGGCATATGCTGCAGATATTGCAAATCAGT
TAGCTACTGATGCTGTTCAGGTTTTCGGAGGCAATGGATTTAATACGGAATATCCTGTAG
AAAAACTAATGAGGGATGCCAAGATCTATCAGATTTATGAAGGTACAGCACAAATTCAAA
GGATTATTATAGCCCGTGAACACATTGGCCGGTATAAAAATTAACAAAATCACTATATGA
ACAATTGTTGAGTAATTAGAACCTGATCTACCATTTAAACTCCAGGAAAGAGAAAGGGCT
TTAAGATTTTTTTCCAGTAAAAATTTAAAAATAAGTATTCTATACTAAACCTATGCAACA
GATTCTAATAGTAGTTGTCTACATTTGTTTAACTTTATGACTTGCTTTTTCTATAATAGA
CTTGGTTTTATTAAAATTATGTGTTGTCCTTAGTTCTACTTACTTGAATTTCATTAACCT
AGAAAAAAATAAATGTTTTGTTATTTTGACCTCAAAATTAAAGTAACAGAGATTCCTTGG
AATTTCAGTATTTTTCCAATGATAAAAAATTGCCTTGTAAAAGTATTTAGAATGTCCAAA
GTTTACATTGAGAAAATATTCTAGTATTTAAATAACTTGCCAGTGATTTTGTAGACTTAA
GGGTTTTATGTTCATATTCTCCATTATACAATGACCAGAAGTTACTTGAAAATCTTTTTT
AATTCTAAGCCCATGTTTCACTTGCTTTGTTGAAAATAAGTCAATAAAGATTTACCTTAA
ATTAAAAAAAAATGATTCTGTTGGTCTCTGGTTAACCTTTGGTCTATAGTACAGAATCTC
ATTTCATGTGGATACATTGTAAAATAAAATTGTTTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGTGGTTTAGAGATTGAGTCACCGGACCGGTTGGCGGCATGGCAGCGATGTTTAGGCGAA
GCTGCAGGGTACTGAGAAGTCTTTCTCATTTTGGCTGGAGATCACAACATACAAAAGCTG
TCCCACAGTGTGAACCAGGATCAGGATTTAGTTTTGAGCTTACTGAACAGCAGAAAGAAT
TTCAAGCTACTGCTCGTAAATTTGCCAGGGAGGAAATAATCCCAGTTGCTGCAGAATATG
ATAGAACTGGCGAGTACCCTGTCCCACTACTTAAAAGAGCCTGGGAACTTGGTTTAATGA
ATACACACATTCCGGAAAGTTTTGGAGGTCTTGGACTTGGAATTATTGATAGCTGTTTAA
TTACTGAAGAACTGGCTTATGGATGTACAGGGGTTCAGACTGCTATTGAAGCAAATACTC
TGGGGCAAGTGCCCCTTATTATTGGTGGAAATTATCAACAACAAAAGAAATATTTGGGGA
GAATGACTGAGGAGCCATTGATGTGTGCCTATTGTGTAACAGAACCAGGAGCAGGCTCTG
ATGTAGCTGGGATAAAGACCAAAGCAGAAAAGAAAGGTGACGAGTATATTATTAATGGCC
AGAAGATGTGGATAACCAATGGAGGAAAAGCTAATTGGTATTTTTTATTGGCTCGTTCTG
ATCCGGATCCAAAGGCTCCTGCTAGTAAAGCCTTTACTGGATTTATTGTGGAAGCAGATA
CCCCAGGAGTGCAGATTGGAAGAAAGGAAATAAATATGGGCCAACGATGTTCAGATACAA
GAGGAATTGTCTTTGAAGATGTGAGAGTGCCTAAGGAAAATGTTTTAACTGGTGAGGGAG
CAGGTTTCAAAATTGCAATGGGAACTTTTGATAAAACCAGACCTCCGGTAGCAGCCGGTG
CTGTGGGACTCGCACAAAGAGCTTTGGATGAAGCTACCAAGTATGCCTTGGAGAGGAAAA
CTTTTGGAAAGCTGCTTGCAGAGCACCAAGGAATATCATTTTTGCTGGCTGACATGGCAA
TGAAAGTTGAACTAGCTAGATTGAGTTACCAGAGAGCAGCTTGGGAGATTGATTCTGGTC
GCCGAAATACCTATTATGCCTCTATTGCAAAGGCATATGCTGCAGATATTGCAAATCAGT
TAGCTACTGATGCTGTTCAGGTTTTCGGAGGCAATGGATTTAATACGGAATATCCTGTAG
AAAAACTAATGAGGGATGCCAAGATCTATCAGATTTATGAAGGTACAGCACAAATTCAAA
GGATTATTATAGCCCGTGAACACATTGGCCGGTATAAAAATTAACAAAATCACTATATGA
ACAATTGTTGAGTAATTAGAACCTGATCTACCATTTAAACTCCAGGAAAGAGAAAGGGCT
TTAAGATTTTTTTCCAGTAAAAATTTAAAAATAAGTATTCTATACTAAACCTATGCAACA
GATTCTAATAGTAGTTGTCTACATTTGTTTAACTTTATGACTTGCTTTTTCTATAATAGA
CTTGGTTTTATTAAAATTATGTGTTGTCCTTAGTTCTACTTACTTGAATTTCATTAACCT
AGAAAAAAATAAATGTTTTGTTATTTTGACCTCAAAATTAAAGTAACAGAGATTCCTTGG
AATTTCAGTATTTTTCCAATGATAAAAAATTGCCTTGTAAAAGTATTTAGAATGTCCAAA
GTTTACATTGAGAAAATATTCTAGTATTTAAATAACTTGCCAGTGATTTTGTAGACTTAA
GGGTTTTATGTTCATATTCTCCATTATACAATGACCAGAAGTTACTTGAAAATCTTTTTT
AATTCTAAGCCCATGTTTCACTTGCTTTGTTGAAAATAAGTCAATAAAGATTTACCTTAA
ATTAAAAAAAAATGATTCTGTTGGTCTCTGGTTAACCTTTGGTCTATAGTACAGAATCTC
ATTTCATGTGGATACATTGTAAAATAAAATTGTTTT
|
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982-1232, gnl|bosTau2|chr3 (48562066-48562316) |
|
982-1232, gnl|canFam2|chr6 (73917422-73917127) |
|
982-1232, gnl|danRer3|chr2 (18011428-18011133) |
|
982-1232, gnl|dasNov1|scaffold_97298 (5431-5132) |
|
982-1232, gnl|echTel1|scaffold_281611 (48576-48848) |
|
982-1232, gnl|fr1|chrUn (269407083-269406785) |
|
982-1232, gnl|galGal2|chrUn (16116873-16116619) |
|
982-1232, gnl|hg17|chr1 (75938785-75939080) |
|
982-1232, gnl|Hg17|chr1 (75938826-75939076) |
|
982-1232, gnl|loxAfr1|scaffold_5986 (29000-28728) |
|
982-1232, gnl|mm7|chr3 (153836524-153836229) |
|
982-1232, gnl|Mm7|chr8 (95753678-95753915) |
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982-1232, gnl|monDom2|scaffold_217 (611244-611549) |
|
982-1232, gnl|panTro1|chr1 (74495199-74495493) |
|
982-1232, gnl|rheMac2|chr1 (78565549-78565844) |
|
982-1232, gnl|rn3|chr2 (251884323-251884032) |
|
982-1232, gnl|tetNig1|chrUn_random (17154124-17154419) |
|
982-1232, gnl|xenTro1|scaffold_514 (535247-534941) |
| |
|
1453-1752, gnl|bosTau2|chr3 (48563891-48564195) |
|
1453-1752, gnl|Hg17|chr1 (75940607-75940897) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
982-1232, gnl|bosTau2|chr3 (48562066-48562316) |
|
982-1232, gnl|canFam2|chr6 (73917422-73917127) |
|
982-1232, gnl|danRer3|chr2 (18011428-18011133) |
|
982-1232, gnl|dasNov1|scaffold_97298 (5431-5132) |
|
982-1232, gnl|echTel1|scaffold_281611 (48576-48848) |
|
982-1232, gnl|fr1|chrUn (269407083-269406785) |
|
982-1232, gnl|galGal2|chrUn (16116873-16116619) |
|
982-1232, gnl|hg17|chr1 (75938785-75939080) |
|
982-1232, gnl|Hg17|chr1 (75938826-75939076) |
|
982-1232, gnl|loxAfr1|scaffold_5986 (29000-28728) |
|
982-1232, gnl|mm7|chr3 (153836524-153836229) |
|
982-1232, gnl|Mm7|chr8 (95753678-95753915) |
|
982-1232, gnl|monDom2|scaffold_217 (611244-611549) |
|
982-1232, gnl|panTro1|chr1 (74495199-74495493) |
|
982-1232, gnl|rheMac2|chr1 (78565549-78565844) |
|
982-1232, gnl|rn3|chr2 (251884323-251884032) |
|
982-1232, gnl|tetNig1|chrUn_random (17154124-17154419) |
|
982-1232, gnl|xenTro1|scaffold_514 (535247-534941) |
| |
|
1453-1752, gnl|bosTau2|chr3 (48563891-48564195) |
|
1453-1752, gnl|Hg17|chr1 (75940607-75940897) |
|
kid (6.87597) |
|
bfe (5.09516) |
|
isp (1.80451) |
|
vin (1.66279) |
|
pro (1.5361) |
|
tbr (1.3876) |
|
ste (1.35208) |
|
ldo (1.16403) |
|
ssp (0.948638) |
|
lun (0.902935) |
|
hea (0.817996) |
|
lin (0.728014) |
|
sme (0.610874) |
|
nje (0.49776) |
|
jej (0.494609) |
|
liv (0.438853) |
|
nms (0.427716) |
|
tes (0.415628) |
|
nep (0.36785) |
|
sin (0.349895) |
|
fco (0.314416) |
|
fat (0.294855) |
|
pla (0.267344) |
|
ova (0.258264) |
|
pan (0.23596) |
|
mgp (0.230681) |
|
fli (0.202881) |
|
aor (0.195274) |
|
col (0.195008) |
|
mgm (0.180343) |
|
ill (0.175593) |
|
rec (0.17307) |
|
ski (0.146735) |
|
spl (0.143184) |
|
ret (0.128733) |
|
tra (0.123092) |
|
clu (0.119646) |
|
pgl (0.118483) |
|
jca (0.11396) |
|
cty (0.10408) |
|
kid (6.87597) |
|
bfe (5.09516) |
|
isp (1.80451) |
|
vin (1.66279) |
|
pro (1.5361) |
|
tbr (1.3876) |
|
ste (1.35208) |
|
ldo (1.16403) |
|
ssp (0.948638) |
|
lun (0.902935) |
|
hea (0.817996) |
|
lin (0.728014) |
|
sme (0.610874) |
|
nje (0.49776) |
|
jej (0.494609) |
|
liv (0.438853) |
|
nms (0.427716) |
|
tes (0.415628) |
|
nep (0.36785) |
|
sin (0.349895) |
|
fco (0.314416) |
|
fat (0.294855) |
|
pla (0.267344) |
|
ova (0.258264) |
|
pan (0.23596) |
|
mgp (0.230681) |
|
fli (0.202881) |
|
aor (0.195274) |
|
col (0.195008) |
|
mgm (0.180343) |
|
ill (0.175593) |
|
rec (0.17307) |
|
ski (0.146735) |
|
spl (0.143184) |
|
ret (0.128733) |
|
tra (0.123092) |
|
clu (0.119646) |
|
pgl (0.118483) |
|
jca (0.11396) |
|
cty (0.10408) |
