Ss1.1-Pig4-TMW8041O01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTGTTACCCTTGACCCCGACCTGCATGACTGGCAATAGAGTAGTAGCAGCCTCTTTTC GAGCAGCTTAGTGAAAACATGGCTGAAGGGAATAAATGCTCTCTGCAGACTGGACAGAAA ATGGCTTTTGTTCCCAGTGTGAATATTTTTCTTCCCACGCACATTTCAGTGTTTGCCGAG AGTGGCAGATACTCATCAAAAATGCTAGGTGTTCTTATCCGTAGGGTTGGTACAGGATAA ACAGTCGTGACAGAAGCTTCCTTCTAACTGGCGCTCTTCTCACTCAGCTCACACGAGCCC CAAGATAAGGATTCATGGTCAGAGCGGCCCGAGGGCTCCAGGAATCCAGGGCAGCAACCT GTCTTGGGCATCAGCAGCCTGCCCCCTGAGAAAAGCTCCTTGAGAGTGCTGGCTTTTTGC TGGCTAAGTTTTTCCTGGGCCCTACCCTTCCTCACTGTAGGTAGACAATGTAAACATCAC AGCAAAACAATTTTAAAGTTCTTTGCTTAGAGCACTTTGTTTATGATTGTAGTTTTTACA TTCCTCATTTAATAAAAGACTTTAACCTCATTCCATTACATTTTTGTGTTTTAGGGGAGT GGGGGCACTCTATGTACAATACGTATCATTTTCTTTAAGTCCTACTGTCATGTCATATAT ACTTGCAATATCAGACCTTGCGTTCAATACACAATGCAATAGAGTCTTTCCAGACTTGTA TTTTTCAGCGAACAATAAAAAGATTGTTTGTCACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTGTTACCCTTGACCCCGACCTGCATGACTGGCAATAGAGTAGTAGCAGCCTCTTTTC GAGCAGCTTAGTGAAAACATGGCTGAAGGGAATAAATGCTCTCTGCAGACTGGACAGAAA ATGGCTTTTGTTCCCAGTGTGAATATTTTTCTTCCCACGCACATTTCAGTGTTTGCCGAG AGTGGCAGATACTCATCAAAAATGCTAGGTGTTCTTATCCGTAGGGTTGGTACAGGATAA ACAGTCGTGACAGAAGCTTCCTTCTAACTGGCGCTCTTCTCACTCAGCTCACACGAGCCC CAAGATAAGGATTCATGGTCAGAGCGGCCCGAGGGCTCCAGGAATCCAGGGCAGCAACCT GTCTTGGGCATCAGCAGCCTGCCCCCTGAGAAAAGCTCCTTGAGAGTGCTGGCTTTTTGC TGGCTAAGTTTTTCCTGGGCCCTACCCTTCCTCACTGTAGGTAGACAATGTAAACATCAC AGCAAAACAATTTTAAAGTTCTTTGCTTAGAGCACTTTGTTTATGATTGTAGTTTTTACA TTCCTCATTTAATAAAAGACTTTAACCTCATTCCATTACATTTTTGTGTTTTAGGGGAGT GGGGGCACTCTATGTACAATACGTATCATTTTCTTTAAGTCCTACTGTCATGTCATATAT ACTTGCAATATCAGACCTTGCGTTCAATACACAATGCAATAGAGTCTTTCCAGACTTGTA TTTTTCAGCGAACAATAAAAAGATTGTTTGTCACCA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 344-435, - strand, RNAz p=0.88784 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 344-435, - strand, RNAz p=0.88784 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-747, gnl|bosTau2|chr10 (31214057-31214796) | |
| 1-747, gnl|canFam2|chr30 (30881632-30882671) | |
| 1-747, gnl|canFam2|chr30 (30881667-30882668) | |
| 1-747, gnl|echTel1|scaffold_293541 (86313-85483) | |
| 1-747, gnl|echTel1|scaffold_293541 (86271-85486) | |
| 1-747, gnl|hg17|chr15 (61387110-61388159) | |
| 1-747, gnl|Hg17|chr15 (61387607-61388365) | |
| 1-747, gnl|hg17|chr7 (81934611-81935626) | |
| 1-747, gnl|loxAfr1|scaffold_11967 (28468-27428) | |
| 1-747, gnl|loxAfr1|scaffold_11967 (28430-27431) | |
| 1-747, gnl|mm7|chr9 (66808647-66807921) | |
| 1-747, gnl|mm7|chr9 (66808618-66807924) | |
| 1-747, gnl|monDom2|scaffold_12 (50421746-50420667) | |
| 1-747, gnl|monDom2|scaffold_12 (50421702-50420672) | |
| 1-747, gnl|oryCun1|scaffold_85376 (1321-2338) | |
| 1-747, gnl|oryCun1|scaffold_85376 (1366-2335) | |
| 1-747, gnl|panTro1|chr16 (61844415-61845463) | |
| 1-747, gnl|panTro1|chr6 (83390006-83391022) | |
| 1-747, gnl|rheMac2|chr3 (134610329-134609310) | |
| 1-747, gnl|rheMac2|chr7 (41679155-41680229) | |
| 1-747, gnl|rn3|chr8 (71105600-71104882) | |
| 1-747, gnl|rn3|chr8 (71105567-71104885) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-747, gnl|bosTau2|chr10 (31214057-31214796) | |
| 1-747, gnl|canFam2|chr30 (30881632-30882671) | |
| 1-747, gnl|canFam2|chr30 (30881667-30882668) | |
| 1-747, gnl|echTel1|scaffold_293541 (86313-85483) | |
| 1-747, gnl|echTel1|scaffold_293541 (86271-85486) | |
| 1-747, gnl|hg17|chr15 (61387110-61388159) | |
| 1-747, gnl|Hg17|chr15 (61387607-61388365) | |
| 1-747, gnl|hg17|chr7 (81934611-81935626) | |
| 1-747, gnl|loxAfr1|scaffold_11967 (28468-27428) | |
| 1-747, gnl|loxAfr1|scaffold_11967 (28430-27431) | |
| 1-747, gnl|mm7|chr9 (66808647-66807921) | |
| 1-747, gnl|mm7|chr9 (66808618-66807924) | |
| 1-747, gnl|monDom2|scaffold_12 (50421746-50420667) | |
| 1-747, gnl|monDom2|scaffold_12 (50421702-50420672) | |
| 1-747, gnl|oryCun1|scaffold_85376 (1321-2338) | |
| 1-747, gnl|oryCun1|scaffold_85376 (1366-2335) | |
| 1-747, gnl|panTro1|chr16 (61844415-61845463) | |
| 1-747, gnl|panTro1|chr6 (83390006-83391022) | |
| 1-747, gnl|rheMac2|chr3 (134610329-134609310) | |
| 1-747, gnl|rheMac2|chr7 (41679155-41680229) | |
| 1-747, gnl|rn3|chr8 (71105600-71104882) | |
| 1-747, gnl|rn3|chr8 (71105567-71104885) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| ecc (0.23007) | |
| hyp (0.142837) |