Non-Coding RNA Search

Ss1.1-Pig4-TMW8041O03.3

Sequence:


               
               GTGTACTCGGTTCTTGGGCACTTGGTTGCCGAGTTGCTGCCATGACCAAAATAAAGGCAG
ATCCCGACGGGCCGGAGGCCCAGGCAGATGCGTGCTGCGGGGAGCGCACTTATCATGAAC
TGCTGGTGAATCTGAACCCCATCGCGCAACCCCTGGCTTCTCGCAAACTGACACGGAAGC
TCTACAAATGCATCAAGAAAGCCGTAAAGCAGAAGCAGATTCGGCGCGGGGTGAAGGAGG
TTCAGAAATTTATCAACAAAGGCGAAAAAGGGATCATGGTTTTGGCAGGAGACACGTTAC
CTGTTGAGGTATACTGCCATCTCCCAGTTATGTGTGAAGACCGGAATTTGCCCTACGTCT
ATATCCCCTCTAAGACGGACCTGGGTGCAGCTGCCGGCTCCAAGCGCCCCACCTGTGTGA
TAATGGTCAAGCCCCATGAGGAATACCAGGAGGCCTATGACGAGTGCCTGGAGGAGGTGC
AAGCCCTGCCCCCACCCATGTGAAGGACTTAGGCAACACCCTGGGCACCTGCTCCGGAAG
CTGTTGGGCTGTTGGCAGGTCAGCTGATTGCCCTCCTGCTGCCCACACTCACAGCATCTC
TGTGGTCCCCCGAAGCACATATTCCTTCCAGACAGCTCCAGTAGCTATTTCATGACAGCA
AAGCCAGCATCTTCTCCATCAATGCAGTTTCCTGTTGAGCTTCAATGAAGATAGTTCCAA
GAATGTGATGGGGGGGGGGAGTAAATGCTAAAACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTACTCGGTTCTTGGGCACTTGGTTGCCGAGTTGCTGCCATGACCAAAATAAAGGCAG
ATCCCGACGGGCCGGAGGCCCAGGCAGATGCGTGCTGCGGGGAGCGCACTTATCATGAAC
TGCTGGTGAATCTGAACCCCATCGCGCAACCCCTGGCTTCTCGCAAACTGACACGGAAGC
TCTACAAATGCATCAAGAAAGCCGTAAAGCAGAAGCAGATTCGGCGCGGGGTGAAGGAGG
TTCAGAAATTTATCAACAAAGGCGAAAAAGGGATCATGGTTTTGGCAGGAGACACGTTAC
CTGTTGAGGTATACTGCCATCTCCCAGTTATGTGTGAAGACCGGAATTTGCCCTACGTCT
ATATCCCCTCTAAGACGGACCTGGGTGCAGCTGCCGGCTCCAAGCGCCCCACCTGTGTGA
TAATGGTCAAGCCCCATGAGGAATACCAGGAGGCCTATGACGAGTGCCTGGAGGAGGTGC
AAGCCCTGCCCCCACCCATGTGAAGGACTTAGGCAACACCCTGGGCACCTGCTCCGGAAG
CTGTTGGGCTGTTGGCAGGTCAGCTGATTGCCCTCCTGCTGCCCACACTCACAGCATCTC
TGTGGTCCCCCGAAGCACATATTCCTTCCAGACAGCTCCAGTAGCTATTTCATGACAGCA
AAGCCAGCATCTTCTCCATCAATGCAGTTTCCTGTTGAGCTTCAATGAAGATAGTTCCAA
GAATGTGATGGGGGGGGGGAGTAAATGCTAAAACTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5E950_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5E950_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               397-516, - strand, RNAz p=0.757881

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               397-516, - strand, RNAz p=0.757881

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-201, gnl|bosTau2|chr7 (22058103-22057902)
               

               
               1-201, gnl|Hg17|chr5 (177513466-177513265)
               

               
               1-201, gnl|Mm7|chr11 (51576536-51576734)
               


               
               359-756, gnl|bosTau2|chr7 (22054885-22054496)
               

               
               359-756, gnl|Hg17|chr5 (177509465-177509073)
               

               
               359-756, gnl|Mm7|chr11 (51579829-51580187)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-201, gnl|bosTau2|chr7 (22058103-22057902)
               

               
               1-201, gnl|Hg17|chr5 (177513466-177513265)
               

               
               1-201, gnl|Mm7|chr11 (51576536-51576734)
               


               
               359-756, gnl|bosTau2|chr7 (22054885-22054496)
               

               
               359-756, gnl|Hg17|chr5 (177509465-177509073)
               

               
               359-756, gnl|Mm7|chr11 (51579829-51580187)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               cov (0.396458)
               

               
               fhi (0.339155)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               med (0.116252)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               fhi (0.339155)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               med (0.116252)

	1-201, gnl\|bosTau2\|chr7 (22058103-22057902)
	1-201, gnl\|Hg17\|chr5 (177513466-177513265)
	1-201, gnl\|Mm7\|chr11 (51576536-51576734)

	359-756, gnl\|bosTau2\|chr7 (22054885-22054496)
	359-756, gnl\|Hg17\|chr5 (177509465-177509073)
	359-756, gnl\|Mm7\|chr11 (51579829-51580187)

	cov (0.396458)
	fhi (0.339155)
	eep (0.245128)
	cly (0.241284)
	col (0.195008)
	nlu (0.191681)
	nep (0.183925)
	ton (0.1755)
	mcp (0.170648)
	cut (0.169924)
	cje (0.165235)
	cag (0.151194)
	pty (0.142714)
	hlv (0.139256)
	nmm (0.132802)
	bla (0.124347)
	med (0.116252)