Ss1.1-Pig4-TMW8041O10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGGAGCCCACTGCGTCTTTATTGTGTCC GGTCAGTCAGCCTGAGAACTGGGGGCTCCAGGTACGGAGGCGGAACTGGGTCCTGGGACG GCCGGCCCGGCTGGCCCGCCCCTGTGGACGTCATAGGCCCAGACGCGGTCCAGACCCTCA CCCACCACCGCCACAGGTTGCCAGGTGGGGAGGGGGAAGCGCCCGGACACGACTCGGGCT CCCACAGGCAACTCTGCCTGCAGCTTGTCCTCCAGCAGTGGGAGCACGCTAGGAGCCAGG AACACAGACACGTTGTAGCAGTCCCTCAGGCTCACCTTCCAGAGGTTTTCACGGCGGTAG GAGACACTACTCGCACAGCCTGCTCTCCAGGCATGCAGCCACGCCAGCCTCACCAGCCAC GGGTTCAACTCATAGCCCAGAGCTGGGCAGAGACCACACTTGTGGGCAGCCAGCACAATC CTGCCATCGCCAGAGCCCAGGTCCACCATCTTTCCAGAACGGCCTCGCAGCAACGACAAT ACATGCTCCACCTGCCTGGCACTCGCGCCGACATAGGGCACCTGCAGCCGCAGCGGCACA CGGCGGAAACCCGGCTGCAGTAGCAGCGCCCAAACCGCGTAGGCGGCCAGGCCCGAGCCC GCAGCCACCTGTAGCAGCTCCAACGCACTCGGCTGCCGCTCGCGCAGCTCGGTCAGCGCC TCGGCCGGGTGGTCCTCCTCCATAGCTGCGCGAGGGCGGCTCGGGGTAGACCCGCCCAAA GGGCCCTCCTCCACTCAGGTCCGAGACCCTCAGGCCCAGAGCTGGAAGGGCCCGCCCTCC CTGCGGCCCCCGACCAGTACCGCGCCCCTTCTCGCAACCCGGCGCCCATCGGCCAGGGCT CCGACGCCGGAAGAGGCGGGGCGGCTTCGTGGCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGGAGCCCACTGCGTCTTTATTGTGTCC GGTCAGTCAGCCTGAGAACTGGGGGCTCCAGGTACGGAGGCGGAACTGGGTCCTGGGACG GCCGGCCCGGCTGGCCCGCCCCTGTGGACGTCATAGGCCCAGACGCGGTCCAGACCCTCA CCCACCACCGCCACAGGTTGCCAGGTGGGGAGGGGGAAGCGCCCGGACACGACTCGGGCT CCCACAGGCAACTCTGCCTGCAGCTTGTCCTCCAGCAGTGGGAGCACGCTAGGAGCCAGG AACACAGACACGTTGTAGCAGTCCCTCAGGCTCACCTTCCAGAGGTTTTCACGGCGGTAG GAGACACTACTCGCACAGCCTGCTCTCCAGGCATGCAGCCACGCCAGCCTCACCAGCCAC GGGTTCAACTCATAGCCCAGAGCTGGGCAGAGACCACACTTGTGGGCAGCCAGCACAATC CTGCCATCGCCAGAGCCCAGGTCCACCATCTTTCCAGAACGGCCTCGCAGCAACGACAAT ACATGCTCCACCTGCCTGGCACTCGCGCCGACATAGGGCACCTGCAGCCGCAGCGGCACA CGGCGGAAACCCGGCTGCAGTAGCAGCGCCCAAACCGCGTAGGCGGCCAGGCCCGAGCCC GCAGCCACCTGTAGCAGCTCCAACGCACTCGGCTGCCGCTCGCGCAGCTCGGTCAGCGCC TCGGCCGGGTGGTCCTCCTCCATAGCTGCGCGAGGGCGGCTCGGGGTAGACCCGCCCAAA GGGCCCTCCTCCACTCAGGTCCGAGACCCTCAGGCCCAGAGCTGGAAGGGCCCGCCCTCC CTGCGGCCCCCGACCAGTACCGCGCCCCTTCTCGCAACCCGGCGCCCATCGGCCAGGGCT CCGACGCCGGAAGAGGCGGGGCGGCTTCGTGGCCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 168-285, - strand, RNAz p=0.572282 | |
| 578-696, - strand, RNAz p=0.734473 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 168-285, - strand, RNAz p=0.572282 | |
| 578-696, - strand, RNAz p=0.734473 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_023933, - |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 32-285, gnl|bosTau2|chr25 (1181727-1181978) | |
| 32-285, gnl|Hg17|chr16 (712592-712309) | |
| 32-285, gnl|Mm7|chr17 (23973745-23974019) | |
| 322-476, gnl|bosTau2|chr25 (1182337-1182489) | |
| 322-476, gnl|canFam2|chr6 (42903194-42903045) | |
| 322-476, gnl|danRer3|chr3 (8002837-8002688) | |
| 322-476, gnl|echTel1|scaffold_294396 (3060-2911) | |
| 322-476, gnl|fr1|chrUn (165445425-165445574) | |
| 322-476, gnl|galGal2|chr14 (1916294-1916146) | |
| 322-476, gnl|hg17|chr16 (711796-711945) | |
| 322-476, gnl|Hg17|chr16 (711954-711802) | |
| 322-476, gnl|loxAfr1|scaffold_111980 (3108-3257) | |
| 322-476, gnl|mm7|chr17 (23974734-23974585) | |
| 322-476, gnl|Mm7|chr17 (23974574-23974726) | |
| 322-476, gnl|monDom2|scaffold_67 (7817-7983) | |
| 322-476, gnl|panTro1|chr18 (752351-752500) | |
| 322-476, gnl|rheMac2|chr20 (714643-714792) | |
| 322-476, gnl|rn3|chr10 (15058678-15058529) | |
| 322-476, gnl|tetNig1|chrUn_random (40432767-40432618) | |
| 322-476, gnl|xenTro1|scaffold_591 (744149-744298) | |
| 578-923, gnl|bosTau2|chr25 (1182894-1183244) | |
| 578-923, gnl|Hg17|chr16 (711441-711050) | |
| 578-923, gnl|Mm7|chr17 (23975289-23975608) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 32-285, gnl|bosTau2|chr25 (1181727-1181978) | |
| 32-285, gnl|Hg17|chr16 (712592-712309) | |
| 32-285, gnl|Mm7|chr17 (23973745-23974019) | |
| 322-476, gnl|bosTau2|chr25 (1182337-1182489) | |
| 322-476, gnl|canFam2|chr6 (42903194-42903045) | |
| 322-476, gnl|danRer3|chr3 (8002837-8002688) | |
| 322-476, gnl|echTel1|scaffold_294396 (3060-2911) | |
| 322-476, gnl|fr1|chrUn (165445425-165445574) | |
| 322-476, gnl|galGal2|chr14 (1916294-1916146) | |
| 322-476, gnl|hg17|chr16 (711796-711945) | |
| 322-476, gnl|Hg17|chr16 (711954-711802) | |
| 322-476, gnl|loxAfr1|scaffold_111980 (3108-3257) | |
| 322-476, gnl|mm7|chr17 (23974734-23974585) | |
| 322-476, gnl|Mm7|chr17 (23974574-23974726) | |
| 322-476, gnl|monDom2|scaffold_67 (7817-7983) | |
| 322-476, gnl|panTro1|chr18 (752351-752500) | |
| 322-476, gnl|rheMac2|chr20 (714643-714792) | |
| 322-476, gnl|rn3|chr10 (15058678-15058529) | |
| 322-476, gnl|tetNig1|chrUn_random (40432767-40432618) | |
| 322-476, gnl|xenTro1|scaffold_591 (744149-744298) | |
| 578-923, gnl|bosTau2|chr25 (1182894-1183244) | |
| 578-923, gnl|Hg17|chr16 (711441-711050) | |
| 578-923, gnl|Mm7|chr17 (23975289-23975608) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| col (0.390016) | |
| nlu (0.383362) | |
| eep (0.367692) | |
| eje (0.197668) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ute (0.132784) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.390016) | |
| nlu (0.383362) | |
| eep (0.367692) | |
| eje (0.197668) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ute (0.132784) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) |